FC932386

Overview
NameFC932386
Unique NameFC932386
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932386 vs. ExPASy Swiss-Prot
Match: PP2B7_ARATH (F-box protein PP2-B7 OS=Arabidopsis thaliana GN=PP2B7 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.116e-26
Identity = 79/231 (34.20%), Postives = 109/231 (47.19%), Query Frame = 2
Query:   35 LPPECISRIISLSTARDACRSSIACPIFKSAADSDYVWEKFLPSDYEQXXXXXXXXXXXXXXXXXXXXYFHLCHNPIIINNGTMSFVLDKESGKKCFMVRAREFYIEWGNTPSYWIWSYLPESRFAE-VAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDTRYGFERRPIEFGVHFEGSDTEERYRVVLDLPKDMPQL---------SQEGEMGWMGDKMGEFFNE 697
            LP ECIS IIS ++ RDAC  ++    F+SA  SD VWEKF+P +YE                     +F LC   ++IN       ++K +GK+C M+ A    +   +T   W W   P S + E V EL    WFEI+ R  T+ LS +T Y+ Y+VF   D  YGF    +E  V   G +  E  R  +   + M             +  E GWM  ++GEFFNE
Sbjct:   43 LPEECISLIISFTSPRDACVFALVSKTFESAVQSDIVWEKFIPPEYES------LLSRSQHFSSKKELFFALCDESVLINVSKKDLWIEKATGKRCMMLSASALNLSTHHT---WKWITNPVSAWLETVPELLTTRWFEIRCRTNTRFLSPRTRYSVYIVFLKADICYGFAYVAMEAVVRMVGHELSESCRRYVCFHEAMEWQFLTRKNLVNPERREDGWMEIEIGEFFNE 264          
BLAST of FC932386 vs. ExPASy Swiss-Prot
Match: P2B15_ARATH (F-box protein PP2-B15 OS=Arabidopsis thaliana GN=PP2B15 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.248e-26
Identity = 64/179 (35.75%), Postives = 94/179 (52.51%), Query Frame = 2
Query:   32 VLPPECISRIISLSTARDACRSSIACPIFKSAADSDYVWEKFLPSDYEQXXXXXXXXXXXXXXXXXXXXYFHLCHNPIIINNGTMSFVLDKESGKKCFMVRAREFYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDTRYGFERRPIEFGV 568
            +LP  C++ I+S +T  D   S+    +F+ A DSD+VWEKFLP+DY                      Y  LC + I+I+NG   F ++K SGK  +++ +R+  I W +   YW WS   +SRF+E  +L +  W EI G+I+T  LS  T Y AYL+ K     YG +  P E  +
Sbjct:    1 MLPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDY--CHVISRSTDPHRIFSSKKELYRCLCES-ILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWSWSPRSDSRFSEGVQLIMTDWLEIIGKIQTGALSPNTNYGAYLIMKVTSRAYGLDLVPAETSI 176          
BLAST of FC932386 vs. ExPASy Swiss-Prot
Match: P2B14_ARATH (F-box protein PP2-B14 OS=Arabidopsis thaliana GN=PP2B14 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.242e-26
Identity = 66/179 (36.87%), Postives = 99/179 (55.31%), Query Frame = 2
Query:   32 VLPPECISRIISLSTARDACRSSIACPIFKSAADSDYVWEKFLPSDYEQXXXXXXXXXXXXXXXXXXXXYFHLCHNPIIINNGTMSFVLDKESGKKCFMVRAREFYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDTRYGFERRPIEFGV 568
            +LP  CI+ I++ ++  DA  SS    +F+ A DSD+VWEKFLPSDY+                     Y  LC + ++I+N    F ++K SGK  +++ AR+  I   +  SYW WS + +SRF+E AEL +    EI+G+I+T++LS  T Y AYL+ K     YG +  P E  +
Sbjct:    3 MLPEACIANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSDYKSLISQSTDHHWNISSKKEI--YRCLCDS-LLIDNARKLFKINKFSGKISYVLSARDISITHSDHASYWSWSNVSDSRFSESAELIITDRLEIEGKIQTRVLSANTRYGAYLIVKVTKGAYGLDLVPAETSI 178          
BLAST of FC932386 vs. ExPASy Swiss-Prot
Match: P2B13_ARATH (F-box protein PP2-B13 OS=Arabidopsis thaliana GN=PP2B13 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.040e-24
Identity = 67/205 (32.68%), Postives = 105/205 (51.22%), Query Frame = 2
Query:   32 VLPPECISRIISLSTARDACRSSIACPIFKSAADSDYVWEKFLPSDYEQXXXXXXXXXXXXXXXXXXXXYFHLCHNPIIINNGTMSFVLDKESGKKCFMVRAREFYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDTRYGFERRPIEFGVHFEGSDTEERYRVVLDLPKDMPQLSQ 646
            +LP  C++ I++ ++  DA  SS    +F+ A DSD+VWEKFLPS Y+                     Y  LC + ++I+N    F ++K SGK  +++ AR+  I + +  SY  WS + +SRF+E AEL      EIKG+I+T +LS  T Y AYL+ K  +  YG +  P E  V  +     +    +  L +   Q+ +
Sbjct:    3 MLPEACVANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSHYKSLISQSTDHHRIFSSKKEI--YRCLCDS-LLIDNARKLFKINKFSGKISYILSARDISITYSDHASYCSWSNVSDSRFSESAELITTDRLEIKGKIQTTVLSPNTKYGAYLIMKVTNGAYGLDLVPAETSVKSKNGQNNKNTTYLCCLDEKKQQMKR 204          
BLAST of FC932386 vs. ExPASy Swiss-Prot
Match: PP2B3_ARATH (F-box protein PP2-B3 OS=Arabidopsis thaliana GN=PP2B3 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 47/114 (41.23%), Postives = 58/114 (50.88%), Query Frame = 2
Query:   35 LPPECISRIISLSTARDACRSSIACPIFKSAADSDYVWEKFLPSDYEQXXXXXXXXXXXXXXXXXXXXYFHLCHNPIIINNGTMSFVLDKESGKKCFMVRAREFYIEWGNTPSY 376
            LP  CIS IIS +T RDAC ++     F+SA  SD VWEKFLP DY                       F LC  P++I  G  SF LDK SG+KC M+  +   I W N+P +
Sbjct:   16 LPENCISNIISFTTPRDACFAASVSKAFESAVQSDSVWEKFLPLDYSSLVPESRVFLSKKELC------FSLCRVPLLIEGGKKSFWLDKTSGEKCIMLSPKGMVISWVNSPQF 123          
BLAST of FC932386 vs. ExPASy Swiss-Prot
Match: P2A15_ARATH (F-box protein PP2-A15 OS=Arabidopsis thaliana GN=PP2A15 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 56/231 (24.24%), Postives = 94/231 (40.69%), Query Frame = 2
Query:   35 LPPECISRIISLSTARDACRSSIACPIFKSAADSDYVWEKFLPSDYEQXXXXXXXXXXXXXXXXXXXXYFHLCHNPIIINNGTMSFVLDKESGKKCFMVRAREFYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKI------LSLKTIYAAYL------VFKFVDTRYGFERRPIEFGVH-FEGSDTEERYRVVLDLPKDMPQLSQEGEMGWMGDKMGEF 688
            +P  C++ +    T  + C  +     F+ AA SD VWEK LP +Y+                      F +   PI  ++      +D+ +G+ C  + AR   I       YW W    ESRF  VA L+ +WWFE+ G +   +      LS +     +       V  F +  +G++ +P+ F +   +G +    Y   LD  +    L +     W+  ++GEF
Sbjct:   24 IPESCVACVFMYLTPPEICNLAGLNRSFRGAASSDSVWEKKLPENYQDLLDLLPPERYHSLSKKDI---FAVLSRPIPFDDDNKEVWIDRVTGRVCMAISARGMSITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGTVRFHLPPGVYSLSFRIHLGRFTKRLGRRVCHF-ELTHGWDLKPVRFSLSTSDGQEASCEY--YLDDVERNEALGKHKRGYWIEYRVGEF 248          
BLAST of FC932386 vs. ExPASy Swiss-Prot
Match: P2A13_ARATH (F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 36/149 (24.16%), Postives = 66/149 (44.30%), Query Frame = 2
Query:   35 LPPECISRIISLSTARDACRSSIACPIFKSAADSDYVWEKFLPSDYEQXXXXXXXXXXXXXXXXXXXXYFHLCHNPIIINNGTMSFVLDKESGKKCFMVRAREFYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILS 481
            LP  C++ I++     + CR +    +F+ A+ +D++WE  LP++Y                       +     P + ++GT    +DK +G+ C  + ++   I   +   YW      ESRF   A ++ +WWFE+ G  E +  S
Sbjct:   28 LPENCVALIMTRLDPPEICRLARLNRMFRRASSADFIWESKLPANYR--VIAHKVFDEITLTKLIKKDLYAKLSQPNLFDDGTKELWIDKNTGRLCLSISSKALRITGIDDRRYWSHIPTDESRFQSAAYVQQIWWFEVGGEFEIQFPS 174          
The following BLAST results are available for this feature:
BLAST of FC932386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PP2B7_ARATH1.116e-2634.20F-box protein PP2-B7 OS=Arabidopsis thaliana GN=PP... [more]
P2B15_ARATH3.248e-2635.75F-box protein PP2-B15 OS=Arabidopsis thaliana GN=P... [more]
P2B14_ARATH4.242e-2636.87F-box protein PP2-B14 OS=Arabidopsis thaliana GN=P... [more]
P2B13_ARATH3.040e-2432.68F-box protein PP2-B13 OS=Arabidopsis thaliana GN=P... [more]
PP2B3_ARATH3.599e-1741.23F-box protein PP2-B3 OS=Arabidopsis thaliana GN=PP... [more]
P2A15_ARATH7.767e-1224.24F-box protein PP2-A15 OS=Arabidopsis thaliana GN=P... [more]
P2A13_ARATH8.587e-1124.16F-box protein PP2-A13 OS=Arabidopsis thaliana GN=P... [more]

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Properties
Property NameValue
Genbank descriptionC34208A10EF PostHarveN Citrus clementina cDNA clone C34208A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932386 ID=FC932386; Name=FC932386; organism=Citrus clementina; type=EST; length=707bp
GGTTGCAAGAAGTAAAATGGATATAACATTTGTTCTGCCACCAGAGTGCA
TTTCCCGCATAATTTCTCTTTCAACTGCTCGCGATGCCTGCAGATCATCA
ATAGCATGTCCCATCTTCAAATCAGCTGCGGATTCAGATTATGTATGGGA
GAAGTTTCTGCCATCCGATTACGAGCAGATCATTTCCGATTCGGCCTCTG
ATTCATCTTTGATTACTTCTTTGTCTAAGAAGGATCTTTATTTTCATCTT
TGTCACAACCCCATCATCATCAATAATGGTACTATGAGCTTTGTGCTGGA
TAAAGAAAGCGGGAAAAAGTGTTTCATGGTTAGAGCAAGAGAGTTTTATA
TTGAATGGGGAAATACACCCAGTTATTGGATATGGTCTTATCTACCAGAG
TCTAGGTTTGCTGAAGTGGCTGAACTCAAGCTTGTGTGGTGGTTTGAAAT
TAAAGGAAGGATAGAGACAAAAATTTTGTCCTTGAAAACTATTTACGCAG
CTTACCTTGTGTTCAAGTTTGTCGATACCCGGTATGGGTTTGAAAGAAGA
CCTATAGAGTTTGGTGTCCACTTTGAGGGAAGCGATACTGAGGAAAGGTA
TAGAGTGGTACTAGATCTTCCGAAGGATATGCCTCAGCTATCTCAAGAAG
GGGAGATGGGGTGGATGGGAGATAAAATGGGTGAGTTCTTTAATGAAATG
GAGATGA
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