FC932404

Overview
NameFC932404
Unique NameFC932404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932404 vs. ExPASy Swiss-Prot
Match: HY6H_HYONI (Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 51/198 (25.76%), Postives = 99/198 (50.00%), Query Frame = 1
Query:  163 RPDQDSPLISDDILISQIPVIDMQSLLSKESMDSELAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKY--------WQRPGDMEG--FGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEEMIEFFEKWTAGMRM---NYYPPCP 717
            R ++D P+ +D      +P+ID+Q       +  ++ K   AC+++G FQ++NHG     + +  +  + FF L  EEK+K+        ++ P + +   + +   +S E+ L W D  +    P+     + +P+ P   RE +  YS+E++ L   ++  + E L +K    + +F+   + ++M   NYYPPCP
Sbjct:   24 RAEKDVPVGND------VPIIDLQQ--HHHLLVQQITK---ACQDFGLFQVINHGFPEELMLETMEVCKEFFALPAEEKEKFKPKGEAAKFELPLEQKAKLYVEGEQLSNEEFLYWKDTLAHGCHPLDQDLVNSWPEKPAKYREVVAKYSVEVRKLTMRMLDYICEGLGLK----LGYFDNELSQIQMMLTNYYPPCP 206          
BLAST of FC932404 vs. ExPASy Swiss-Prot
Match: ACCO1_PETHY (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Petunia hybrida GN=ACO1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 46/175 (26.29%), Postives = 83/175 (47.43%), Query Frame = 1
Query:  205 ISQIPVIDMQSLLSKESMDSELAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEEMIEFF---EKWTAGMRMNYYPPCPQ 720
            +   P+I +  +   E   + +  +  AC+ WGFF+LVNHG+    ++ ++K  +G +   ME++ K       +EG     V +E   +DW   F +  LP+        P L    RE +  ++  L+ LAE L+  + E L ++   +   F   +    G +++ YPPCP+
Sbjct:    1 MENFPIISLDKVNGVERA-ATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQRFKELVASKALEG-----VQAEVTDMDWESTFFLKHLPI--SNISEVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPK 167          
BLAST of FC932404 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 51/192 (26.56%), Postives = 89/192 (46.35%), Query Frame = 1
Query:  160 IRPDQDSPLISDDILISQIPVIDMQSLLSKESMDSELAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLP--VHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEEMIEFF---EKWTAGMRMNYYPPCPQ 720
            ++P + +PL +       IPV+D+    +K  + +       AC+++GFF+LVNHG+    +  L+ E   FF  S  EK +    P D  G+G    +     + W +   + T P  +  +   +F + P   R  +E Y   +K +   ++  M E L I+    +      EK  +  R+N+YPPCP+
Sbjct:   15 LKPFKSTPLFTG------IPVVDLTHPDAKNLIVN-------ACRDFGFFKLVNHGVPLELMANLENEALRFFKKSQSEKDR--AGPPDPFGYGSK-RIGPNGDVGWVEYLLLNTNPDVISPKSLCIFRENPHHFRAVVENYITAVKNMCYAVLELMAEGLGIRQRNTLSRLLKDEKSDSCFRLNHYPPCPE 190          
BLAST of FC932404 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 59/235 (25.11%), Postives = 97/235 (41.28%), Query Frame = 1
Query:   43 AAILKGFEEQKMAQIGSSLLVPCVQELVKNPALVVPDRYIRPD----QDSPLISDDILISQIPVIDMQS----LLSKESMDSELAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQR-PGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEEMIEFFEKWTAGMRMNYYPPCPQ 720
            + +LK F+E K            V+ L+      +P  +  P        P  S D     IP ID++      +++ S+   + K+  A ++WGFFQ++NHG+    LEK+   +  F     E KK ++ R P     +   F +      +W D     T P     P     LP +  E +  YS E+  L + L   + E L +    + +     +  +  +YYPPCPQ
Sbjct:   14 STLLKAFDETKTG----------VKGLIDAGITEIPSIFRAPPATLTSPKPPSSSDF---SIPTIDLKGGGTDSITRRSL---VEKIGDAAEKWGFFQVINHGIPMDVLEKMIDGIREFHEQDTEVKKGFYSRDPASKMVYSSNFDLFSSPAANWRDTLGCYTAP----DPPRPEDLPATCGEMMIEYSKEVMKLGKLLFELLSEALGLNTNHLKDMDCTNSLLLLGHYYPPCPQ 228          
BLAST of FC932404 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 52/231 (22.51%), Postives = 93/231 (40.26%), Query Frame = 1
Query:  112 VQELVKNPALVVPDRYIRPDQDSPLISD----------DILISQIPVIDMQSLLSKESMDSE----LAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRP--GDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKD-----EEMIEFFEKWTAG-------MRMNYYPPCPQ 720
            V+ L  +    +P  Y+RP  +   + D          D    +IPV+D+   L   S   +    +  +  A  +WG   +  HG+    +++L+     FF L +++K+ Y   P  G ++G+G     +   + +W D    +  P  L    L+P  PP        +    + LA  L++ +   L   D     E+ +      TA        +++NYYP CPQ
Sbjct:   14 VEALSLSGLSAIPPEYVRPADERAGLGDAFDLARTHANDHTAPRIPVVDISPFLDSSSQQQQRDECVEAVRAAAADWGVMHIAGHGIPAELMDRLRAAGTAFFALPVQDKEAYANDPAAGRLQGYGSRLATNTCGQREWEDYLFHLVHPDGLADHALWPAYPPDYIAATRDFGRRTRDLASTLLAILSMGLLGTDRGDALEKALTTTTTRTAADDDLLLQLKINYYPRCPQ 244          
BLAST of FC932404 vs. ExPASy Swiss-Prot
Match: ACCO1_CUCME (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo GN=ACO1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 44/171 (25.73%), Postives = 86/171 (50.29%), Query Frame = 1
Query:  217 PVIDMQSLLSKESMDSELAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEEMIEFF---EKWTAGMRMNYYPPCPQ 720
            P+I+++++ + +     L +++ AC+ WGFF+LVNHG+   FL+ ++K     +   MEE+ K       +E        +E   +DW   F +  LP           L    ++ ++ ++ +L+ LAE L+  + E L ++   + + F   +  T G +++ YPPCP+
Sbjct:    5 PIINLENI-NDDGRAKILEQIEDACQNWGFFELVNHGIPHEFLDMVEKMTRDHYKKCMEERFKETVLSKGLEA-----AQAEVNDMDWESTFFLRHLPE--SNISQMSDLDEEYKKIMKEFAKKLENLAEELLDLLCENLGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPK 167          
BLAST of FC932404 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 45/177 (25.42%), Postives = 88/177 (49.72%), Query Frame = 1
Query:  205 ISQIPVIDMQSLLSKESMDSELAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEEMIEFFEKWTAGM-----RMNYYPPCPQ 720
            +   PVI+M+ L  +E   + +  ++ AC+ WGFF+LVNH +    ++++++  +  +   ME++ K       +EG      V +   +DW   F +  LPV        P L    R+ ++ ++ +L+ LAE ++  + E L ++   +   F   T G+     +++ YPPCP+
Sbjct:    1 MDSFPVINMEKLEGQERA-ATMKLINDACENWGFFELVNHSIPVELMDEVERLTKEHYKKCMEQRFKELM-ASKVEG-----AVVDANDMDWESTFFIRHLPVSNLSE--IPDLTDEHRKVMKEFAEKLEKLAEQVLDLLCENLGLEKGYLKMAFAGTTTGLPTFGTKVSNYPPCPR 168          
BLAST of FC932404 vs. ExPASy Swiss-Prot
Match: ACCO_DIACA (Probable 1-aminocyclopropane-1-carboxylate oxidase OS=Dianthus caryophyllus GN=ACO PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 46/178 (25.84%), Postives = 85/178 (47.75%), Query Frame = 1
Query:  205 ISQIPVIDMQSLLSKESMDSELA--KLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDM-EGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEEMIEFF---EKWTAGMRMNYYPPCPQ 720
            I   P+IDM+ L +   ++  L   ++  AC  WGFFQ+VNH +S   ++K+++  +  +    E+K K      DM +  G     S+   +DW   F +   P         P L    R+ ++ ++ +++ L+E L+  + E L ++   +   F      T G +++ YPPCP+
Sbjct:    4 IVNFPIIDMEKLNNYNGVERSLVLDQIKDACHNWGFFQVVNHSLSHELMDKVERMTKEHYKKFREQKFK------DMVQTKGLVSAESQVNDIDWESTFYLRHRPT--SNISEVPDLDDQYRKLMKEFAAQIERLSEQLLDLLCENLGLEKAYLKNAFYGANGPTFGTKVSNYPPCPK 173          
The following BLAST results are available for this feature:
BLAST of FC932404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
HY6H_HYONI6.116e-1225.76Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H... [more]
ACCO1_PETHY6.116e-1226.291-aminocyclopropane-1-carboxylate oxidase 1 OS=Pet... [more]
G2OX_PHACN1.043e-1126.56Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]
ACCH1_ARATH1.780e-1125.111-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
LDOX_MAIZE2.324e-1122.51Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]
ACCO1_CUCME3.035e-1125.731-aminocyclopropane-1-carboxylate oxidase 1 OS=Cuc... [more]
ACCO_PERAE5.178e-1125.421-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]
ACCO_DIACA6.762e-1125.84Probable 1-aminocyclopropane-1-carboxylate oxidase... [more]

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Properties
Property NameValue
Genbank descriptionC34208C04EF PostHarveN Citrus clementina cDNA clone C34208C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932404 ID=FC932404; Name=FC932404; organism=Citrus clementina; type=EST; length=721bp
GATTGTCAGCACTCAGTCTTGTTCCAAAACCAATACAAAGCTGCAGCAAT
CTTGAAAGGATTTGAGGAACAAAAGATGGCCCAGATTGGAAGTTCTCTCC
TTGTGCCTTGTGTTCAAGAGTTGGTCAAGAATCCGGCGTTAGTTGTCCCC
GACAGATACATACGTCCAGATCAAGATTCACCCCTCATTTCTGATGATAT
TTTGATTTCACAGATACCAGTTATTGACATGCAAAGCTTACTTTCTAAAG
AATCAATGGATTCTGAGTTAGCCAAGCTCGACTTCGCATGCAAAGAATGG
GGTTTTTTCCAGCTGGTAAATCATGGAATGAGCACAGCATTTCTAGAGAA
ATTAAAGAAAGAGGTTGAGGGATTCTTCAATCTCAGCATGGAAGAAAAGA
AAAAATATTGGCAGCGTCCAGGAGATATGGAAGGATTTGGACAAGCCTTT
GTTGTATCGGAGGAACAAAAGCTTGATTGGGCTGACCTTTTCTCCATGAT
GACTCTTCCAGTTCATCTGAGGAAACCACATTTATTTCCTAAGCTCCCTC
CTTCCCTCAGAGAGACCTTGGAAGTTTACTCAATGGAATTAAAAACCCTA
GCCGAGAACCTAATATCGAAAATGGGAGAAGTGTTAAATATCAAAGATGA
AGAAATGATAGAATTCTTTGAAAAATGGACTGCAGGAATGAGGATGAATT
ATTACCCTCCATGTCCTCAGC
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