FC932409

Overview
NameFC932409
Unique NameFC932409
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length356
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932409 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.793e-20
Identity = 49/106 (46.23%), Postives = 59/106 (55.66%), Query Frame = 2
Query:   41 ASAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTNG-CQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACPGKGFYTYDAFIAAANSF 355
            A A+ CGSQ GG  C  G CCSKFG+CGNT  YC +G CQSQC G                             +F+Q+LKHRN+ +C GK FY+Y+AFI AA SF
Sbjct:   24 ALAQNCGSQGGGKACASGQCCSKFGWCGNTNDYCGSGNCQSQCPG-----------GGPGPGPGGDLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSF 118          
BLAST of FC932409 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.678e-18
Identity = 44/101 (43.56%), Postives = 52/101 (51.49%), Query Frame = 2
Query:   53 QCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTNGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACPGKGFYTYDAFIAAANSF 355
            QCGSQAG A CP  LCCS  G+CG T AYC  GC SQC                               +FEQ+L +RN+ +CPGKGFYTYDA+  A   +
Sbjct:   25 QCGSQAGNATCPNDLCCSSGGYCGLTVAYCCAGCVSQCRNCFFT-----------------------ESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFY 102          
BLAST of FC932409 vs. ExPASy Swiss-Prot
Match: WIN1_SOLTU (Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.625e-13
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 2
Query:   20 LYKKALLASAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYC--TNGCQSQCSG 172
            L+  A +A+A+QCG Q GGA+C G LCCS+FG+CG+TP +C  + GCQS+C+G
Sbjct:   16 LFSIAAIANAQQCGRQKGGALCSGNLCCSQFGWCGSTPEFCSPSQGCQSRCTG 68          
BLAST of FC932409 vs. ExPASy Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.054e-12
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 2
Query:   38 LASAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYC--TNGCQSQCSG 172
            +A+A+QCG Q GGA+C   LCCS+FG+CG+TP YC  + GCQSQC+G
Sbjct:   22 VANAQQCGRQRGGALCGNNLCCSQFGWCGSTPEYCSPSQGCQSQCTG 68          
BLAST of FC932409 vs. ExPASy Swiss-Prot
Match: HEVL_ARATH (Hevein-like protein OS=Arabidopsis thaliana GN=HEL PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.861e-11
Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = 2
Query:   44 SAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYC--TNGCQSQCSG 172
            + +QCG Q GG  CPG +CCS++G+CG T  YC  TN CQS C G
Sbjct:   20 AGQQCGRQGGGRTCPGNICCSQYGYCGTTADYCSPTNNCQSNCWG 64          
The following BLAST results are available for this feature:
BLAST of FC932409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CHIT_SOLTU1.793e-2046.23Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI8_POPTR1.678e-1843.56Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
WIN1_SOLTU1.625e-1356.60Wound-induced protein WIN1 OS=Solanum tuberosum GN... [more]
WIN2_SOLTU1.054e-1261.70Wound-induced protein WIN2 OS=Solanum tuberosum GN... [more]
HEVL_ARATH9.861e-1155.56Hevein-like protein OS=Arabidopsis thaliana GN=HEL... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34208C09EF PostHarveN Citrus clementina cDNA clone C34208C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932409 ID=FC932409; Name=FC932409; organism=Citrus clementina; type=EST; length=356bp
TTTTCTTGGACAAAGTGGGCTTTATAAGAAAGCATTGCTGGCGTCGGCTG
AACAGTGTGGCAGCCAGGCTGGAGGAGCTGTATGTCCAGGAGGACTGTGT
TGCAGCAAATTTGGCTTCTGCGGCAACACTCCTGCTTATTGCACCAATGG
CTGCCAAAGCCAGTGCAGTGGGTCACCCTCACCCACGCCGACTAATCCGA
CTCCCGTACCTGCTCCAAGCGGCGGCGGGAACAATATCGGTTCACTAATT
AGCAGGGACCTATTTGAACAGCTGTTGAAGCATCGTAATGATGCTGCTTG
CCCAGGAAAAGGTTTTTACACTTACGACGCTTTCATCGCTGCCGCCAATT
CCTTTG
back to top