FC932410

Overview
NameFC932410
Unique NameFC932410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932410 vs. ExPASy Swiss-Prot
Match: SYFA_YEAST (Phenylalanyl-tRNA synthetase alpha chain OS=Saccharomyces cerevisiae GN=FRS2 PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 55/188 (29.26%), Postives = 98/188 (52.13%), Query Frame = 2
Query:  167 DVINVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEMGK----QVSRKVQNVE-----DKVKDLLLQVQNGHALSKEE---ISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKVATDLTRENLQKGDWKEIGVQEYNFNAKG 694
            DV++ + SL     ++   +   T+ LT EG +   EGS E++L   +   G +   ++  KL P V K+G ++A KN W+        ++S K+QN +     D+ + +L Q++N   L   +   ++ LK RKLI       ++V KGP ++    K+ TDLT + +    +K++  + YNFN++G
Sbjct:   32 DVLSALNSLKAHNKLEFSKVDTVTYDLTKEGAQILNEGSYEIKLVKLIQELGQLQIKDVMSKLGPQVGKVGQARAFKNGWIAKNASNELELSAKLQNTDLNELTDETQSILAQIKNNSHLDSIDAKILNDLKKRKLIAQGKITDFNVTKGPEFSTDLTKLETDLTSDMVSTNAYKDLKFKPYNFNSQG 219          
BLAST of FC932410 vs. ExPASy Swiss-Prot
Match: SYFA_NOSCE (Probable phenylalanyl-tRNA synthetase alpha chain OS=Nosema ceranae (strain BRL01) GN=NCER_100038 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.292e-15
Identity = 58/178 (32.58%), Postives = 89/178 (50.00%), Query Frame = 2
Query:  164 NDVINVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVE-MGKQVSRKVQNVEDKVKDLLLQVQNGHALSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKVATDLTRENLQKGDWKEIGVQEYNFNAKG 694
            N++  V+ SL     I     ++  + LT EG+     GS E  L+ ++   G        + L+   + +G   A KNKW++ +G +V +   NVED VK++L  V N     KEEIS LK RKLI       Y ++KGP Y      + T+L  + +  G++K +  + YNFN KG
Sbjct:   27 NELYPVLLSLASKEIISFTFKEQIIYKLTEEGESILKNGSYEFNLYNSIGDNG-------MELLEVDKYNLGKVNAFKNKWIKKVGDKVYKSADNVEDNVKNMLNNVTN-KIYQKEEISLLKKRKLIYQAKEVVYFIKKGPLYGKDSDNI-TELISKMVISGEYKHLNFKPYNFNTKG 195          
BLAST of FC932410 vs. ExPASy Swiss-Prot
Match: SYFA_ENCCU (Probable phenylalanyl-tRNA synthetase alpha chain OS=Encephalitozoon cuniculi GN=ECU07_1660 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.094e-14
Identity = 49/152 (32.24%), Postives = 87/152 (57.24%), Query Frame = 2
Query:  242 VLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEM-GKQVSRKVQNVEDKVKDLLLQVQNGHALSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKVATDLTRENLQKGDWKEIGVQEYNFNAKG 694
            VLT EG++    GS E  L  ++  +G +S +EL++        +G   A +NKW+   G +V R V+++ED V+++++ ++ G A S EE+ +L+ RKL+  +    +   KGP +      V T+LT E +  G ++++  + YNFNA+G
Sbjct:   54 VLTPEGEEVERSGSQEYLLLESIGEDG-MSIEELERH------SLGKMNAFRNKWIRREGNRVFRNVESIEDTVRNMVISMKRGTA-SAEEVEALRKRKLVSRRKKIVFIATKGPMFFDNTSYV-TELTSEMVLDGSYRDLSFKHYNFNAEG 196          
BLAST of FC932410 vs. ExPASy Swiss-Prot
Match: SYFA_SCHPO (Phenylalanyl-tRNA synthetase alpha chain OS=Schizosaccharomyces pombe GN=SPAC3G9.06 PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 57/200 (28.50%), Postives = 102/200 (51.00%), Query Frame = 2
Query:  104 EKNEQISDSGNFAAERGFDHNDVINVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGS-ISKDELQKKLDPAVFKIGCSQAGKNKWVEM-GKQVSRKVQNVEDKVKDLLLQV-QNGHALSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKVATDLTRENLQKGDWKEIGVQEYNFNAKG 694
            EKNE  + S      +     +  + I SL     I+    + E + LT EG+   A GS E +++  + A  S ++  EL+KKL  +   IG  +A K  W++  G ++ +   ++ D+   +L ++ ++G     + ++ LK RKL+       +S+RKGPN++ + +K+ TDLT E +    W+    + YNF A+G
Sbjct:   17 EKNEIPNTSHLEFDGKKLGPQEAQSAILSLAAKNMIEFSRHEIEIYNLTAEGENICANGSHEAKVYNEICASMSGLNIGELKKKLGNSA-GIGQGRAFKLGWIKKDGDKLVKNTDSITDETPKVLSEIKEHGTISDSKTLTDLKKRKLVERNKIMYFSLRKGPNFSLQIEKLNTDLTAEMITSRSWESAKFKSYNFAAEG 215          
The following BLAST results are available for this feature:
BLAST of FC932410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
SYFA_YEAST3.176e-1829.26Phenylalanyl-tRNA synthetase alpha chain OS=Saccha... [more]
SYFA_NOSCE4.292e-1532.58Probable phenylalanyl-tRNA synthetase alpha chain ... [more]
SYFA_ENCCU8.094e-1432.24Probable phenylalanyl-tRNA synthetase alpha chain ... [more]
SYFA_SCHPO2.355e-1328.50Phenylalanyl-tRNA synthetase alpha chain OS=Schizo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34208C10EF PostHarveN Citrus clementina cDNA clone C34208C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932410 ID=FC932410; Name=FC932410; organism=Citrus clementina; type=EST; length=699bp
AAAATCTGGAAACACTAATCCGAGAGTCACAGAGCGCAACAGCTGACTCT
CCCATTAGAGCGGCGGCAGCGCCATGGCCGAAGAGGCGATTCTAGGGTAC
TTAGAGAAGAATGAGCAAATCTCGGATTCTGGTAACTTCGCCGCCGAACG
CGGGTTTGATCATAACGACGTCATTAATGTCATCAAAAGCCTCCACGGTT
TCCGTTACATCGACGCACAGGACATTAAGAGGGAGACGTGGGTGCTTACC
GGTGAGGGTAAGAAGTATGCTGCTGAAGGGTCACCCGAGGTTCAATTGTT
CTTGGCAGTGCCAGCGGAGGGTAGTATCTCGAAAGACGAATTGCAGAAAA
AGCTTGATCCTGCAGTTTTCAAAATAGGTTGCTCCCAGGCTGGTAAAAAT
AAGTGGGTGGAGATGGGGAAGCAAGTTTCGAGGAAGGTTCAAAATGTGGA
AGACAAAGTCAAAGATTTGCTTCTACAAGTACAAAATGGACATGCGCTTA
GCAAAGAGGAGATTAGCAGTCTCAAAGCACGGAAGCTTATTGTTCCCCAG
ACATGGAAGGGGTACTCAGTGAGAAAAGGTCCTAATTATGCTCCCAAAAG
GAAGAAAGTTGCTACAGATTTGACTCGAGAGAACCTTCAGAAGGGTGATT
GGAAGGAAATTGGAGTTCAAGAGTACAACTTCAATGCTAAAGGACAGCC
back to top