FC932444

Overview
NameFC932444
Unique NameFC932444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: GLYR1_DROME (Putative oxidoreductase GLYR1 homolog OS=Drosophila melanogaster GN=CG4747 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.667e-38
Identity = 78/211 (36.97%), Postives = 122/211 (57.82%), Query Frame = 2
Query:   80 GFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLE-QICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGLDPRTLLDVLDLGGIANP 709
            GFLGLG+MG  I  +L+  G KV VWNRT+ KC      GA V  +P +V++   +    ++DP  A  +VF   GVL+ +    K Y++MST+D +TS+ I   I    G +LEA + GS+Q A  G L+IL+ G++++++E  S    I K  FFLG IGN  K+ L++  I+G  +   +E L L ++  +    ++D+ DL  + +P
Sbjct:  319 GFLGLGMMGSTIVKDLIYTGHKVVVWNRTIDKCQPFAEAGAEVKDTPMDVVEAADVIFCCVSDPKGAKDLVFGNCGVLQLKDLNNKAYVEMSTIDPDTSLDIGEGIKQCNGRYLEAQIHGSRQEAAEGMLIILAGGDRSVFEECHSCFKTIAKNTFFLGNIGNACKVNLILQTILGVSLVGLAEALALADRFSISLNDIIDIFDLTSMKSP 529          
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: GLYR1_DROPS (Putative oxidoreductase GLYR1 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA18401 PE=3 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.714e-38
Identity = 79/215 (36.74%), Postives = 122/215 (56.74%), Query Frame = 2
Query:   68 KMEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLE-QICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGLDPRTLLDVLDLGGIANP 709
            ++  GFLGLG+MG  I  +L+  G KV VWNRT+ KC   V  GA V  +P +V++   I    ++DP  A  +VF   GVL+ +    K Y++MSTVD +TS+ I   I    G +LEA + GS+Q A  G L+IL+ G++ +++E  S    I K  FFLG +GN  K+ L++  I    +   +E L L ++  +    ++D+ DL  + +P
Sbjct:  325 ELTFGFLGLGMMGSTIVKDLIYTGHKVVVWNRTIDKCQPFVEAGAEVKDTPMDVVEAADIIFCCVSDPKGAKDLVFGNCGVLQLKDLRNKAYVEMSTVDPDTSLDIGEGIKQCNGRYLEAQIHGSRQEAADGMLIILAGGDRTVFEECHSCFKTIAKNTFFLGNVGNACKVNLILQTIQAVSLVGLAEALALADRFSISLNDIIDIFDLTSMKSP 539          
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: GARR_ECOLI (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=garR PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.550e-28
Identity = 71/211 (33.65%), Postives = 114/211 (54.03%), Query Frame = 2
Query:   71 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGLDPRTLLDVLDLGGIA 703
            M+VGF+GLGIMGK +S NLL+ G+ + V +R      +++A GA    +   + ++C + I ML +      V   + G++E   PG   IDMS++    S +IS A+ +KG   L+APVSG +  A  G L ++  G+KA++D+    +  +       GEIG G   KL   +I+   +   SE L L  K+G++P  +   +  GG+A
Sbjct:    1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAI-RGGLA 210          
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: GARR_ECOL6 (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli O6 GN=garR PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.550e-28
Identity = 71/211 (33.65%), Postives = 114/211 (54.03%), Query Frame = 2
Query:   71 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGLDPRTLLDVLDLGGIA 703
            M+VGF+GLGIMGK +S NLL+ G+ + V +R      +++A GA    +   + ++C + I ML +      V   + G++E   PG   IDMS++    S +IS A+ +KG   L+APVSG +  A  G L ++  G+KA++D+    +  +       GEIG G   KL   +I+   +   SE L L  K+G++P  +   +  GG+A
Sbjct:    1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAI-RGGLA 210          
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: YFJR_BACSU (Uncharacterized oxidoreductase yfjR OS=Bacillus subtilis GN=yfjR PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.464e-26
Identity = 70/205 (34.15%), Postives = 111/205 (54.15%), Query Frame = 2
Query:   71 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEIGNGAK-MKLVVNMIMGCMMNTFSEGLVLTEKSGLDPRTLLDV 682
            M++  +GLG MG+ I+ N+L+ G+++TV+NRT  K ++LV  GA    +P    K   I I MLAD  +  +V F + G+LE +     +I MST+  E S K++ A   KG  FL APV G    A    L I++AG       A   L+ + ++ F +GE    A   K+ +N ++  M+   SE  ++ EK GL+ +  L++
Sbjct:    1 MKIAVIGLGNMGQPIARNVLQAGYELTVYNRTKQKTEDLVTEGAQAADTPRLAAKSADIVITMLADDDSVSTVTFGEDGLLEGLAENGIHISMSTISVEFSEKLAAAHAEKGQFFLAAPVLGRPDAAAKAALRIITAGPAEAKQAAKPLLDSLSQQIFDVGEESKTANAAKISINFLLVSMLEALSESFLMMEKYGLEQKQFLEI 205          
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: 3HIDH_MOUSE (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Mus musculus GN=Hibadh PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.261e-26
Identity = 66/208 (31.73%), Postives = 108/208 (51.92%), Query Frame = 2
Query:   68 KMEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGLDPRTLLDVLDL 691
            K  VGF+GLG MG  ++ NL+++G+ + +++     C E    G  V  SPAEV +K    I ML     A+ V     G+L+++  G   ID ST+D   S ++++ +   G  F++APVSG    A +G L  +  G +  +  A   L  +G    + G +G G   K+  NM++   M   +E + L  +SGLDP+ L  +L++
Sbjct:   38 KTPVGFIGLGNMGNPMAKNLMKHGYPLILYDVFPDVCKEFKEAGEQVASSPAEVAEKADRIITMLPSSMNAVEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLECMGSNVVYCGAVGTGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKILNM 245          
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: 3HIDH_RAT (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hibadh PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 7.265e-26
Identity = 64/208 (30.77%), Postives = 109/208 (52.40%), Query Frame = 2
Query:   68 KMEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGLDPRTLLDVLDL 691
            K  VGF+GLG MG  ++ NL+++G+ + +++     C E    G  V  SPA+V +K    I ML     ++ V     G+L+++  G   ID ST+D   S ++++ +   G  F++APVSG    A +G L  +  G +  +  A   L  +G    + G +G+G   K+  NM++   M   +E + L  +SGLDP+ L  +L++
Sbjct:   38 KTPVGFIGLGNMGNPMAKNLIKHGYPLILYDVFPDVCKEFKEAGEQVASSPADVAEKADRIITMLPSSMNSIEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVENEFAAAQELLGCMGSNVLYCGAVGSGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKILNM 245          
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: 3HIDH_DICDI (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=hibA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.032e-25
Identity = 62/204 (30.39%), Postives = 105/204 (51.47%), Query Frame = 2
Query:   77 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGLDPRTLLDVLD 688
            VGF+GLG MG   ++NL++ G  + V++ +    + L   GA +  SPAEV K+  + + ML   A   +V   + G+ + + PG   +D ST+D  T+ +++          L+ PVSG    AE G L  +  G +  ++ A + L  +GK     G++G G   K+  N+++G  M   SE + L  K G+DP+ L  + +
Sbjct:   25 VGFIGLGNMGGHQAINLIKKGHNLIVFDMSKDNMNRLKEKGAKIANSPAEVAKEADVIVTMLPASAHVKNVYCGENGIFQTVRPGTLLLDSSTIDPATAREVASIAKKHQSTMLDCPVSGGTGGAEAGTLTFMVGGSEQDFNTAKTYLECMGKNIVHCGDVGTGQVAKVCNNLVLGISMIAVSEAMNLGVKQGMDPKKLAGIFN 228          
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: YKWC_BACSU (Uncharacterized oxidoreductase ykwC OS=Bacillus subtilis GN=ykwC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 62/209 (29.67%), Postives = 108/209 (51.67%), Query Frame = 2
Query:   68 KMEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGLDPRTLLDVLDLG 694
            K  +GF+GLG+MGK+++ ++L +G  V V+ RT  K + ++  GA    +  ++ K+  + I M+  P+    V F   G++E    G   IDM+T     + KI+ A   K    L+APVSG    A+ G L I+  GEK  ++  +   +++G+   + G  G+G   K+   + +   M   +E +   +KSGL+P  +L  +  G
Sbjct:    2 KKTIGFIGLGVMGKSMASHILNDGHPVLVYTRTKEKAESILQKGAIWKDTVKDLSKEADVIITMVGYPSDVEEVYFGSNGIIENAKEGAYLIDMTTSKPSLAKKIAEAAKEKALFALDAPVSGGDIGAQNGTLAIMVGGEKEAFEACMPIFSLMGENIQYQGPAGSGQHTKMCNQIAIAAGMIGVAEAMAYAQKSGLEPENVLKSITTG 210          
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: 3HIDH_PONAB (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Pongo abelii GN=HIBADH PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.337e-24
Identity = 63/208 (30.29%), Postives = 106/208 (50.96%), Query Frame = 2
Query:   68 KMEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGLDPRTLLDVLDL 691
            K  VGF+GLG MG  ++ NL+++G+ + +++     C E    G  V  SPA+V +K    I ML     A+       G+L+++  G   ID ST+D   S ++++ +   G  F++APVSG    A +G L  +  G +  +  A   L  +G    + G +G G   K+  NM++   M   +E + L  + GLDP+ L  +L++
Sbjct:   39 KTPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNM 246          
The following BLAST results are available for this feature:
BLAST of FC932444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
GLYR1_DROME1.667e-3836.97Putative oxidoreductase GLYR1 homolog OS=Drosophil... [more]
GLYR1_DROPS3.714e-3836.74Putative oxidoreductase GLYR1 homolog OS=Drosophil... [more]
GARR_ECOLI4.550e-2833.652-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
GARR_ECOL64.550e-2833.652-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
YFJR_BACSU1.464e-2634.15Uncharacterized oxidoreductase yfjR OS=Bacillus su... [more]
3HIDH_MOUSE3.261e-2631.733-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_RAT7.265e-2630.773-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_DICDI8.032e-2530.39Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
YKWC_BACSU1.789e-2429.67Uncharacterized oxidoreductase ykwC OS=Bacillus su... [more]
3HIDH_PONAB2.337e-2430.293-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]

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Properties
Property NameValue
Genbank descriptionC34208F08EF PostHarveN Citrus clementina cDNA clone C34208F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932444 ID=FC932444; Name=FC932444; organism=Citrus clementina; type=EST; length=714bp
GAAGTAAGTAGATCTGAAAAGCGGAAAAAATTTAGAACACAGAGGAGGAA
GATATTGAAAAAACAAGAAAATGGAAGTGGGGTTTCTGGGTTTAGGAATT
ATGGGCAAGGCCATTTCTATGAACTTGCTTAGAAATGGATTCAAAGTTAC
TGTATGGAACAGGACTCTCTCTAAGTGTGATGAACTCGTGGCACACGGTG
CTACAGTTGGAGGAAGTCCAGCAGAAGTAATTAAAAAGTGTACGATTACT
ATTGGGATGTTAGCTGATCCTGCGGCTGCACTTTCGGTTGTCTTTGACAA
AGGTGGTGTTTTGGAGCAAATTTGTCCTGGGAAAGGTTACATTGACATGT
CAACAGTTGATCATGAAACTTCAATAAAGATCAGCCGGGCAATTACATCA
AAAGGCGGTCACTTCCTTGAAGCTCCAGTTTCAGGTAGCAAGCAGCCTGC
AGAAACTGGTCAACTAGTAATCCTTTCTGCTGGGGAGAAGGCACTCTATG
ATGAAGCAATTTCAGCTCTCAATGTAATTGGAAAGAAGGCCTTCTTTTTG
GGGGAGATCGGAAACGGAGCAAAAATGAAACTTGTTGTTAACATGATAAT
GGGCTGTATGATGAATACATTTTCTGAAGGACTTGTACTGACTGAAAAGA
GTGGACTTGACCCTCGCACTTTACTTGATGTACTGGACCTGGGTGGTATT
GCTAATCCCTATGT
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