FC932478

Overview
NameFC932478
Unique NameFC932478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HSF1_MOUSE (Heat shock factor protein 1 OS=Mus musculus GN=Hsf1 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  100 FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVV---------PDR--WEFSNDCFHRGEQQLLREIQRR 369
            FLTK + LV D   D +I W+  G +F V++   FA+++LP+YFKHNN +SFVRQLN YGF+KVV         P+R   EF + CF RG++QLL  I+R+
Sbjct:   18 FLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 118          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HSF1_HUMAN (Heat shock factor protein 1 OS=Homo sapiens GN=HSF1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  100 FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVV---------PDR--WEFSNDCFHRGEQQLLREIQRR 369
            FLTK + LV D   D +I W+  G +F V++   FA+++LP+YFKHNN +SFVRQLN YGF+KVV         P+R   EF + CF RG++QLL  I+R+
Sbjct:   18 FLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 118          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HSF1_BOVIN (Heat shock factor protein 1 OS=Bos taurus GN=HSF1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.282e-18
Identity = 48/101 (47.52%), Postives = 66/101 (65.35%), Query Frame = 1
Query:  100 FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVV---------PDR--WEFSNDCFHRGEQQLLREIQRR 369
            FLTK + LV D   D +I W+  G +F V +   FA+++LP+YFKH+N +SFVRQLN YGF+KVV         P+R   EF + CF RG++QLL  I+R+
Sbjct:   18 FLTKLWTLVSDPDTDALICWSPSGNSFHVLDQGQFAKEVLPKYFKHSNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 118          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HSF_XENLA (Heat shock factor protein OS=Xenopus laevis GN=hsf1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 47/101 (46.53%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  100 FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVV---------PDR--WEFSNDCFHRGEQQLLREIQRR 369
            FL K + LV+D   D +I W+ +G +F V++   FA+++LP+YFKHNN +SFVRQLN YGF+KVV         P+R   EF +  F RG++QLL  I+R+
Sbjct:   15 FLAKLWTLVEDPDTDPLICWSPEGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPYFIRGQEQLLENIKRK 115          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HSF1_CHICK (Heat shock factor protein 1 OS=Gallus gallus GN=HSF1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.550e-18
Identity = 46/101 (45.54%), Postives = 64/101 (63.37%), Query Frame = 1
Query:  100 FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVV-----------PDRWEFSNDCFHRGEQQLLREIQRR 369
            FLTK + LV+D   D +I W+  G +F V++   FA+++LP+YFKHNN +SFVRQLN YGF+KVV            D  EF +  F RG++ LL  I+R+
Sbjct:   23 FLTKLWTLVEDPETDPLICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPEKDDTEFQHPYFIRGQEHLLENIKRK 123          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HSF4_MOUSE (Heat shock factor protein 4 OS=Mus musculus GN=Hsf4 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 47/105 (44.76%), Postives = 66/105 (62.86%), Query Frame = 1
Query:   91 PTP-FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVP-----------DRWEFSNDCFHRGEQQLLREIQRR 369
            P P FL K + LV D   D +I W+  GT+F+V + + FA+++LP+YFKH+N +SFVRQLN YGF+KVV            D  EF +  F RG +QLL  ++R+
Sbjct:   16 PVPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRK 120          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HSF4_HUMAN (Heat shock factor protein 4 OS=Homo sapiens GN=HSF4 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 47/105 (44.76%), Postives = 66/105 (62.86%), Query Frame = 1
Query:   91 PTP-FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVP-----------DRWEFSNDCFHRGEQQLLREIQRR 369
            P P FL K + LV D   D +I W+  GT+F+V + + FA+++LP+YFKH+N +SFVRQLN YGF+KVV            D  EF +  F RG +QLL  ++R+
Sbjct:   17 PVPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRK 121          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HSF4_CANFA (Heat shock factor protein 4 OS=Canis familiaris GN=HSF4 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 47/105 (44.76%), Postives = 66/105 (62.86%), Query Frame = 1
Query:   91 PTP-FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVP-----------DRWEFSNDCFHRGEQQLLREIQRR 369
            P P FL K + LV D   D +I W+  GT+F+V + + FA+++LP+YFKH+N +SFVRQLN YGF+KVV            D  EF +  F RG +QLL  ++R+
Sbjct:   16 PVPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRK 120          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HSF3_CHICK (Heat shock factor protein 3 OS=Gallus gallus GN=HSF3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.127e-17
Identity = 47/105 (44.76%), Postives = 63/105 (60.00%), Query Frame = 1
Query:   91 PTP-FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVP-----------DRWEFSNDCFHRGEQQLLREIQRR 369
            P P FL K + LV+D   DDVI W+++G  F + +   FA++LLP+YFKHNN SSF+RQLN YGF+KVV               EF +  F +G   LL  I+R+
Sbjct:   15 PVPGFLAKLWALVEDPQSDDVICWSRNGENFCILDEQRFAKELLPKYFKHNNISSFIRQLNMYGFRKVVALENGMITAEKNSVIEFQHPFFKQGNAHLLENIKRK 119          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HSF_YEAST (Heat shock factor protein OS=Saccharomyces cerevisiae GN=HSF1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.740e-17
Identity = 42/102 (41.18%), Postives = 63/102 (61.76%), Query Frame = 1
Query:  100 FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKV-----------VPDRWEFSNDCFHRGEQQLLREIQRRK 372
            F+ K + +++D +   +I W +DG +F+V N   F   +LP+YFKH+NF+SFVRQLN YG+ KV             D+W+F N+ F RG + LL +I R+K
Sbjct:  175 FVNKLWSMLNDDSNTKLIQWAEDGKSFIVTNREEFVHQILPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSIQSSSDDKWQFENENFIRGREDLLEKIIRQK 276          
The following BLAST results are available for this feature:
BLAST of FC932478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
HSF1_MOUSE3.877e-1948.51Heat shock factor protein 1 OS=Mus musculus GN=Hsf... [more]
HSF1_HUMAN3.877e-1948.51Heat shock factor protein 1 OS=Homo sapiens GN=HSF... [more]
HSF1_BOVIN3.282e-1847.52Heat shock factor protein 1 OS=Bos taurus GN=HSF1 ... [more]
HSF_XENLA7.312e-1846.53Heat shock factor protein OS=Xenopus laevis GN=hsf... [more]
HSF1_CHICK9.550e-1845.54Heat shock factor protein 1 OS=Gallus gallus GN=HS... [more]
HSF4_MOUSE1.247e-1744.76Heat shock factor protein 4 OS=Mus musculus GN=Hsf... [more]
HSF4_HUMAN1.247e-1744.76Heat shock factor protein 4 OS=Homo sapiens GN=HSF... [more]
HSF4_CANFA1.247e-1744.76Heat shock factor protein 4 OS=Canis familiaris GN... [more]
HSF3_CHICK2.127e-1744.76Heat shock factor protein 3 OS=Gallus gallus GN=HS... [more]
HSF_YEAST4.740e-1741.18Heat shock factor protein OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC34209A08EF PostHarveN Citrus clementina cDNA clone C34209A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932478 ID=FC932478; Name=FC932478; organism=Citrus clementina; type=EST; length=710bp
CATATGACTCCGCCTCCGACGGCAATGGAGCAGAACGGAGACTCTACACC
GTCGCCGACGACTACGGCCAGCGACTCTCAACGTTCTATGCCGACGCCGT
TTTTGACGAAAACTTATCAGTTAGTTGACGATCAGGCGATTGACGACGTT
ATTTCGTGGAACAAAGACGGAACTACGTTCGTCGTCTGGAATCCTACCAT
TTTCGCTAGAGATTTGCTTCCTAGATACTTCAAACACAACAATTTTTCTA
GCTTCGTTCGTCAACTCAACACTTATGGGTTTAAAAAAGTTGTACCCGAT
CGGTGGGAGTTTTCTAACGACTGCTTCCACCGTGGCGAGCAACAGCTTCT
GCGTGAAATTCAGCGACGGAAGATTCAATCAGCGGCGACGGCGCAGCCTG
TCACCGTTGCGGTGCCGGCCGTGGTTCCGGTGGCGAAACCGATTGTGTCG
CCGTCGAATTCGGGGGAAGAGCAGGTGATTTCGTCGAACTCATCACCGGC
AGCGGGAGCGGCCGGTGTAACCGCTCACACGTGTGGAGGTGGTCACACGT
GTGCGGAGATAGTTGAAGAGAACGATAAATTGAGGAAGGAGAATGCTCAG
CTGAACAAGCAGGTGGCGGAAATGAAGAATCTCTGTAAACATATATTTAG
TTTGATGTCTAATTCACCCGTGGTGGTGNTTGGTGGTGGTGACGGCGGCG
GTCAGGCGGC
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