FC932484
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_METST (50S ribosomal protein L2P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl2p PE=3 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 8.983e-40 Identity = 90/223 (40.36%), Postives = 128/223 (57.40%), Query Frame = 3 Query: 36 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRP 701 MG+ + QR+GRG+ + +++ + +R+ D E G G+V +IIHD GR AP+A V+F + + + +A E + I G +A++ GN LPL+ +PEGT + N+E GD G R+SG Y ++I H+ + KT +++PSG K +R VG+VAGGGR +KP LKAG H K RGVAMN VDHPHGGGN GRP Sbjct: 1 MGKRLIIQRRGRGTPTYRSSSHRFRGKVAYRSYDKLEREGSLTGIVIDIIHDPGRSAPVAVVKFDNGEE-----KLVLAPESIAIDDEIECGVSASIEPGNTLPLSEIPEGTPVFNIENNPGDGGKFVRSSGTYASLITHDVD--KTMIEMPSGELKAFNPRSRATVGVVAGGGRKEKPFLKAGNRYHALKAKGKKMMTVRGVAMNAVDHPHGGGNRQHPGRP 216
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_METKA (50S ribosomal protein L2P OS=Methanopyrus kandleri GN=rpl2p PE=3 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 2.001e-39 Identity = 89/223 (39.91%), Postives = 122/223 (54.71%), Query Frame = 3 Query: 36 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRP 701 MG+ IR QR GRG + A + + + R D E G G V E++HD R AP+A+V+F + + EG G I G +A + GN LPLA +PEG I N+E + GD G R G Y T+I H+ G+T V+LPSG + R +G+++GGG+ +KP +KAG+ + K WPK RGVAMN VDHP GGGN + G+P Sbjct: 1 MGKRIRPQRLGRGGPTYRAPSHRYRGRIEHRPYDEQEKKGKVVGKVVELLHDPARNAPVARVRFEDGEE-----RLILVPEGTKVGDIIECGVSAEIKPGNTLPLAEIPEGVPIFNIEGQPGDGGKFARAPGCYATIIAHDV--GRTYVQLPSGKVRTFDPRCRATIGVMSGGGKREKPFVKAGKKYYHMRSKGGKWPKVRGVAMNAVDHPFGGGNHQSPGKP 216
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_METS3 (50S ribosomal protein L2P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl2p PE=3 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 5.823e-39 Identity = 90/223 (40.36%), Postives = 127/223 (56.95%), Query Frame = 3 Query: 36 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRP 701 MG+ + QR+GRG+ + K ++R+ D E G +G+V +I+HD R AP+A+V+F + K + +A E + I G +A + GN LPLA +PEGT I ++E GD G R+SG Y ++I H+ ++ V+LPSG K + R +G+VAGGGR +KP LKAG H + K + RGVAMN VDHPHGGGN GRP Sbjct: 1 MGKRLIIQRRGRGTPAHRVASHRFKDKIRYRSYDALEKEGSIKGIVTDIVHDPARTAPIAEVKFENGEK-----KFILAPESIQIDDEIECGISAPIKFGNTLPLAEIPEGTPIYDIENTPGDGGRFVRSSGTYASLITHDAN--QSVVELPSGELKYLNPRCRASIGVVAGGGRKEKPFLKAGNRWHAYKAKGKKFMTVRGVAMNAVDHPHGGGNRQHPGRP 216
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_THENV (50S ribosomal protein L2P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl2p PE=3 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 7.605e-39 Identity = 90/223 (40.36%), Postives = 127/223 (56.95%), Query Frame = 3 Query: 36 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRP 701 MG+ I QR+GRG S F + + + P ++ L A RG V +IIH G AP+AK++ + +F A EG+Y GQ I G+ A+ GN++ L PEGT++ NVE++ GD G R+ G Y V+G PE+ KT V+LPSG + R VG+VAGGGR +KP++KAG+ ++ K +P RG AM+P HPHGGG+ G P Sbjct: 1 MGKRILVQRRGRGGSQFRSPSWRREGPVRYPPLGTAG-----RGYVVDIIHVPGLNAPVAKIRLENGLEFLNY-----AAEGLYVGQEIEIGEAASPKTGNVVVLGKAPEGTMVFNVEKRPGDGGKFARSGGTYAVVVGQKPEENKTIVRLPSGRTMEVDARGRATVGLVAGGGRIEKPMVKAGKKYYRARAKAWKYPLVRGKAMSPYAHPHGGGSHQKGGTP 213
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_HALMA (50S ribosomal protein L2P OS=Haloarcula marismortui GN=rpl2p PE=1 SV=4) HSP 1 Score: 159.844 bits (403), Expect = 1.297e-38 Identity = 92/224 (41.07%), Postives = 120/224 (53.57%), Query Frame = 3 Query: 36 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRPR 704 MGR I+ QR+GRG S F A + KA + R ++ + G V +I HD R AP+A V+F + +A EG+ G + G +A + GN LPLA +PEG + NVE GD G R SG ++ H + VKLPSG K + R +G+VAGGGRTDKP +KAG HK + WP RGVAMN VDHP GGG G+P+ Sbjct: 1 MGRRIQGQRRGRGTSTFRAPSHRYKADLEHRKVEDGDV---IAGTVVDIEHDPARSAPVAAVEFEDGDR-----RLILAPEGVGVGDELQVGVSAEIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTH--DRNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGKPK 214
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_NATPD (50S ribosomal protein L2P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl2p PE=3 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 3.774e-38 Identity = 92/224 (41.07%), Postives = 122/224 (54.46%), Query Frame = 3 Query: 36 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRPR 704 MGR I QR+GRG S F A + KA R ++ ++ G V +I HD R APLA VQF + +A EG+ G I G +A + GN +PLA +PEG + NVE + GD G R SG T++ H + V+LPSG + + R +G+VAGGGRT+KP +KAG HK + WP+ RGVAMN VDHP GGG G+P+ Sbjct: 1 MGRRILGQRRGRGTSTFRAPSHRYKADLSHRNVEESDL---VTGEVVDIEHDPARSAPLADVQFDDGDR-----RLVLAPEGVTVGDEIQIGVSAEIAPGNTMPLAEIPEGVPVCNVERQPGDGGKFARASGVSATLLTH--DRNAAVVQLPSGEMRRLSPECRATIGVVAGGGRTEKPFVKAGNKHHKMKSRGGKWPRVRGVAMNAVDHPFGGGGRQHPGKPK 214
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_UNCMA (50S ribosomal protein L2P OS=Uncultured methanogenic archaeon RC-I GN=rpl2p PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 6.438e-38 Identity = 88/226 (38.94%), Postives = 127/226 (56.19%), Query Frame = 3 Query: 36 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHG--YTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRPR 704 MG+ + +Q +G+GS + A + KA L+ + G G++ E++HD R P+ +V+F + + +A EG+ G I G +A + GN LPL+ +PEG I N+E + GD GA R+SG Y ++ H E KT V++PSG K + R +G+VAGGGRT+KP ++AG +K A K WP RGVAMN VDHP GGG GRP+ Sbjct: 1 MGKRLMSQNRGKGSPTYRATSSRFKAD-----LEHIKTFGDETIEGIITEVVHDPARNCPIIRVKFGNGEE-----RLILAPEGVGVGDKIACGISAEIKPGNTLPLSEIPEGCAICNIESQPGDGGAFARSSGVYAIIVAH--EGKKTVVQMPSGEIKRLNPKCRATIGVVAGGGRTEKPFVRAGNKWYKMANKATKWPVVRGVAMNAVDHPFGGGGRQHPGRPK 214
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_HALSA (50S ribosomal protein L2P OS=Halobacterium salinarium GN=rpl2p PE=3 SV=3) HSP 1 Score: 157.147 bits (396), Expect = 8.408e-38 Identity = 91/224 (40.62%), Postives = 120/224 (53.57%), Query Frame = 3 Query: 36 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRPR 704 MGR I+ QR+GRG S F A + KA + + + G V ++ HD R AP+A+V F + +A+EG+ G I G +A + GN LPLA +PEG + NVE GD G R G ++ H E T V+LPSG K + R +G+VAGGGRT+KP +KAG HK + WP+ RGVAMN VDHP GGG GRP+ Sbjct: 1 MGRRIQGQRRGRGTSTFRAPSHRYKAELSHKRTEDTDV---LAGEVIDVEHDPARSAPVARVAFEDDDQ-----RLVLASEGVGVGDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTH--ERDATIVELPSGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMKARGTKWPRVRGVAMNAVDHPFGGGGRQHPGRPK 214
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_HALS3 (50S ribosomal protein L2P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 8.408e-38 Identity = 91/224 (40.62%), Postives = 120/224 (53.57%), Query Frame = 3 Query: 36 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRPR 704 MGR I+ QR+GRG S F A + KA + + + G V ++ HD R AP+A+V F + +A+EG+ G I G +A + GN LPLA +PEG + NVE GD G R G ++ H E T V+LPSG K + R +G+VAGGGRT+KP +KAG HK + WP+ RGVAMN VDHP GGG GRP+ Sbjct: 1 MGRRIQGQRRGRGTSTFRAPSHRYKAELSHKRTEDTDV---LAGEVIDVEHDPARSAPVARVAFEDDDQ-----RLVLASEGVGVGDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTH--ERDATIVELPSGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMKARGTKWPRVRGVAMNAVDHPFGGGGRQHPGRPK 214
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_SULSO (50S ribosomal protein L2P OS=Sulfolobus solfataricus GN=rpl2p PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.434e-37 Identity = 89/222 (40.09%), Postives = 124/222 (55.86%), Query Frame = 3 Query: 36 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRP 701 MG+ + QR G+GS T N + + + G+ G V +I+H+ G AP+A V+ + KF M A +G+ Q I GK + + GN++ + PEGT++ NVEE GD G R++G+Y V+G + + + ++LPS K + N AR VGIVAGGG +KPLLKAG K+ VK WP RGVAMN VDHPHGGG + RP Sbjct: 1 MGKNLLQQRAGKGS----PTFRNPGWLRIGKVRYPNIFGHFIGKVIDIVHNPGMNAPVALVKLENGTKFLMQ-----AIQGLVVNQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKSGD--RVLIRLPSDKIKAVSNKARATVGIVAGGGVIEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRP 211 The following BLAST results are available for this feature:
BLAST of FC932484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932484 ID=FC932484; Name=FC932484; organism=Citrus clementina; type=EST; length=721bpback to top |