FC932484

Overview
NameFC932484
Unique NameFC932484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_METST (50S ribosomal protein L2P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.983e-40
Identity = 90/223 (40.36%), Postives = 128/223 (57.40%), Query Frame = 3
Query:   36 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRP 701
            MG+ +  QR+GRG+  + +++   +    +R+ D  E  G   G+V +IIHD GR AP+A V+F +  +     +  +A E +     I  G +A++  GN LPL+ +PEGT + N+E   GD G   R+SG Y ++I H+ +  KT +++PSG  K     +R  VG+VAGGGR +KP LKAG   H    K       RGVAMN VDHPHGGGN    GRP
Sbjct:    1 MGKRLIIQRRGRGTPTYRSSSHRFRGKVAYRSYDKLEREGSLTGIVIDIIHDPGRSAPVAVVKFDNGEE-----KLVLAPESIAIDDEIECGVSASIEPGNTLPLSEIPEGTPVFNIENNPGDGGKFVRSSGTYASLITHDVD--KTMIEMPSGELKAFNPRSRATVGVVAGGGRKEKPFLKAGNRYHALKAKGKKMMTVRGVAMNAVDHPHGGGNRQHPGRP 216          
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_METKA (50S ribosomal protein L2P OS=Methanopyrus kandleri GN=rpl2p PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.001e-39
Identity = 89/223 (39.91%), Postives = 122/223 (54.71%), Query Frame = 3
Query:   36 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRP 701
            MG+ IR QR GRG   + A +   +   + R  D  E  G   G V E++HD  R AP+A+V+F    +        +  EG   G  I  G +A +  GN LPLA +PEG  I N+E + GD G   R  G Y T+I H+   G+T V+LPSG  +      R  +G+++GGG+ +KP +KAG+  +    K   WPK RGVAMN VDHP GGGN  + G+P
Sbjct:    1 MGKRIRPQRLGRGGPTYRAPSHRYRGRIEHRPYDEQEKKGKVVGKVVELLHDPARNAPVARVRFEDGEE-----RLILVPEGTKVGDIIECGVSAEIKPGNTLPLAEIPEGVPIFNIEGQPGDGGKFARAPGCYATIIAHDV--GRTYVQLPSGKVRTFDPRCRATIGVMSGGGKREKPFVKAGKKYYHMRSKGGKWPKVRGVAMNAVDHPFGGGNHQSPGKP 216          
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_METS3 (50S ribosomal protein L2P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.823e-39
Identity = 90/223 (40.36%), Postives = 127/223 (56.95%), Query Frame = 3
Query:   36 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRP 701
            MG+ +  QR+GRG+      +   K   ++R+ D  E  G  +G+V +I+HD  R AP+A+V+F +  K     +  +A E +     I  G +A +  GN LPLA +PEGT I ++E   GD G   R+SG Y ++I H+    ++ V+LPSG  K +    R  +G+VAGGGR +KP LKAG   H +  K   +   RGVAMN VDHPHGGGN    GRP
Sbjct:    1 MGKRLIIQRRGRGTPAHRVASHRFKDKIRYRSYDALEKEGSIKGIVTDIVHDPARTAPIAEVKFENGEK-----KFILAPESIQIDDEIECGISAPIKFGNTLPLAEIPEGTPIYDIENTPGDGGRFVRSSGTYASLITHDAN--QSVVELPSGELKYLNPRCRASIGVVAGGGRKEKPFLKAGNRWHAYKAKGKKFMTVRGVAMNAVDHPHGGGNRQHPGRP 216          
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_THENV (50S ribosomal protein L2P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.605e-39
Identity = 90/223 (40.36%), Postives = 127/223 (56.95%), Query Frame = 3
Query:   36 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRP 701
            MG+ I  QR+GRG S F + +   + P ++  L  A      RG V +IIH  G  AP+AK++  +  +F        A EG+Y GQ I  G+ A+   GN++ L   PEGT++ NVE++ GD G   R+ G Y  V+G  PE+ KT V+LPSG    +    R  VG+VAGGGR +KP++KAG+  ++   K   +P  RG AM+P  HPHGGG+    G P
Sbjct:    1 MGKRILVQRRGRGGSQFRSPSWRREGPVRYPPLGTAG-----RGYVVDIIHVPGLNAPVAKIRLENGLEFLNY-----AAEGLYVGQEIEIGEAASPKTGNVVVLGKAPEGTMVFNVEKRPGDGGKFARSGGTYAVVVGQKPEENKTIVRLPSGRTMEVDARGRATVGLVAGGGRIEKPMVKAGKKYYRARAKAWKYPLVRGKAMSPYAHPHGGGSHQKGGTP 213          
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_HALMA (50S ribosomal protein L2P OS=Haloarcula marismortui GN=rpl2p PE=1 SV=4)

HSP 1 Score: 159.844 bits (403), Expect = 1.297e-38
Identity = 92/224 (41.07%), Postives = 120/224 (53.57%), Query Frame = 3
Query:   36 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRPR 704
            MGR I+ QR+GRG S F A +   KA  + R ++  +      G V +I HD  R AP+A V+F    +        +A EG+  G  +  G +A +  GN LPLA +PEG  + NVE   GD G   R SG    ++ H  +     VKLPSG  K +    R  +G+VAGGGRTDKP +KAG   HK   +   WP  RGVAMN VDHP GGG     G+P+
Sbjct:    1 MGRRIQGQRRGRGTSTFRAPSHRYKADLEHRKVEDGDV---IAGTVVDIEHDPARSAPVAAVEFEDGDR-----RLILAPEGVGVGDELQVGVSAEIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTH--DRNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGKPK 214          
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_NATPD (50S ribosomal protein L2P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.774e-38
Identity = 92/224 (41.07%), Postives = 122/224 (54.46%), Query Frame = 3
Query:   36 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRPR 704
            MGR I  QR+GRG S F A +   KA    R ++ ++      G V +I HD  R APLA VQF    +        +A EG+  G  I  G +A +  GN +PLA +PEG  + NVE + GD G   R SG   T++ H  +     V+LPSG  + +    R  +G+VAGGGRT+KP +KAG   HK   +   WP+ RGVAMN VDHP GGG     G+P+
Sbjct:    1 MGRRILGQRRGRGTSTFRAPSHRYKADLSHRNVEESDL---VTGEVVDIEHDPARSAPLADVQFDDGDR-----RLVLAPEGVTVGDEIQIGVSAEIAPGNTMPLAEIPEGVPVCNVERQPGDGGKFARASGVSATLLTH--DRNAAVVQLPSGEMRRLSPECRATIGVVAGGGRTEKPFVKAGNKHHKMKSRGGKWPRVRGVAMNAVDHPFGGGGRQHPGKPK 214          
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_UNCMA (50S ribosomal protein L2P OS=Uncultured methanogenic archaeon RC-I GN=rpl2p PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.438e-38
Identity = 88/226 (38.94%), Postives = 127/226 (56.19%), Query Frame = 3
Query:   36 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHG--YTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRPR 704
            MG+ + +Q +G+GS  + A +   KA      L+  +  G     G++ E++HD  R  P+ +V+F +  +        +A EG+  G  I  G +A +  GN LPL+ +PEG  I N+E + GD GA  R+SG Y  ++ H  E  KT V++PSG  K +    R  +G+VAGGGRT+KP ++AG   +K A K   WP  RGVAMN VDHP GGG     GRP+
Sbjct:    1 MGKRLMSQNRGKGSPTYRATSSRFKAD-----LEHIKTFGDETIEGIITEVVHDPARNCPIIRVKFGNGEE-----RLILAPEGVGVGDKIACGISAEIKPGNTLPLSEIPEGCAICNIESQPGDGGAFARSSGVYAIIVAH--EGKKTVVQMPSGEIKRLNPKCRATIGVVAGGGRTEKPFVRAGNKWYKMANKATKWPVVRGVAMNAVDHPFGGGGRQHPGRPK 214          
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_HALSA (50S ribosomal protein L2P OS=Halobacterium salinarium GN=rpl2p PE=3 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 8.408e-38
Identity = 91/224 (40.62%), Postives = 120/224 (53.57%), Query Frame = 3
Query:   36 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRPR 704
            MGR I+ QR+GRG S F A +   KA    +  +  +      G V ++ HD  R AP+A+V F    +        +A+EG+  G  I  G +A +  GN LPLA +PEG  + NVE   GD G   R  G    ++ H  E   T V+LPSG  K +    R  +G+VAGGGRT+KP +KAG   HK   +   WP+ RGVAMN VDHP GGG     GRP+
Sbjct:    1 MGRRIQGQRRGRGTSTFRAPSHRYKAELSHKRTEDTDV---LAGEVIDVEHDPARSAPVARVAFEDDDQ-----RLVLASEGVGVGDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTH--ERDATIVELPSGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMKARGTKWPRVRGVAMNAVDHPFGGGGRQHPGRPK 214          
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_HALS3 (50S ribosomal protein L2P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.408e-38
Identity = 91/224 (40.62%), Postives = 120/224 (53.57%), Query Frame = 3
Query:   36 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRPR 704
            MGR I+ QR+GRG S F A +   KA    +  +  +      G V ++ HD  R AP+A+V F    +        +A+EG+  G  I  G +A +  GN LPLA +PEG  + NVE   GD G   R  G    ++ H  E   T V+LPSG  K +    R  +G+VAGGGRT+KP +KAG   HK   +   WP+ RGVAMN VDHP GGG     GRP+
Sbjct:    1 MGRRIQGQRRGRGTSTFRAPSHRYKAELSHKRTEDTDV---LAGEVIDVEHDPARSAPVARVAFEDDDQ-----RLVLASEGVGVGDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTH--ERDATIVELPSGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMKARGTKWPRVRGVAMNAVDHPFGGGGRQHPGRPK 214          
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_SULSO (50S ribosomal protein L2P OS=Sulfolobus solfataricus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.434e-37
Identity = 89/222 (40.09%), Postives = 124/222 (55.86%), Query Frame = 3
Query:   36 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRP 701
            MG+ +  QR G+GS     T  N    +   + +    G+  G V +I+H+ G  AP+A V+  +  KF M      A +G+   Q I  GK + +  GN++ +   PEGT++ NVEE  GD G   R++G+Y  V+G + +  +  ++LPS   K + N AR  VGIVAGGG  +KPLLKAG    K+ VK   WP  RGVAMN VDHPHGGG   +  RP
Sbjct:    1 MGKNLLQQRAGKGS----PTFRNPGWLRIGKVRYPNIFGHFIGKVIDIVHNPGMNAPVALVKLENGTKFLMQ-----AIQGLVVNQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKSGD--RVLIRLPSDKIKAVSNKARATVGIVAGGGVIEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRP 211          
The following BLAST results are available for this feature:
BLAST of FC932484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_METST8.983e-4040.3650S ribosomal protein L2P OS=Methanosphaera stadtm... [more]
RL2_METKA2.001e-3939.9150S ribosomal protein L2P OS=Methanopyrus kandleri... [more]
RL2_METS35.823e-3940.3650S ribosomal protein L2P OS=Methanobrevibacter sm... [more]
RL2_THENV7.605e-3940.3650S ribosomal protein L2P OS=Thermoproteus neutrop... [more]
RL2_HALMA1.297e-3841.0750S ribosomal protein L2P OS=Haloarcula marismortu... [more]
RL2_NATPD3.774e-3841.0750S ribosomal protein L2P OS=Natronomonas pharaoni... [more]
RL2_UNCMA6.438e-3838.9450S ribosomal protein L2P OS=Uncultured methanogen... [more]
RL2_HALSA8.408e-3840.6350S ribosomal protein L2P OS=Halobacterium salinar... [more]
RL2_HALS38.408e-3840.6350S ribosomal protein L2P OS=Halobacterium salinar... [more]
RL2_SULSO1.434e-3740.0950S ribosomal protein L2P OS=Sulfolobus solfataric... [more]

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Properties
Property NameValue
Genbank descriptionC34209B02EF PostHarveN Citrus clementina cDNA clone C34209B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932484 ID=FC932484; Name=FC932484; organism=Citrus clementina; type=EST; length=721bp
GAACGACAAGCCTATATCACTTCGAGACAGTCGCCATGGGTCGTGTCATC
CGCAACCAGAGGAAGGGTCGTGGCTCCATTTTCACGGCCAACACCCGCCT
GAACAAGGCCCCTGCCCAATTCCGGACCCTCGACTTCGCTGAGGCTCACG
GTTACACCCGTGGTGTCGTCAAGGAGATCATCCACGATGCCGGCCGTGGT
GCTCCCCTCGCCAAGGTTCAGTTCCGCCACCCCTACAAGTTCAAGATGAT
CACCGAGACTTTCATCGCCAACGAGGGCATGTACACCGGCCAGTTCATCT
ACGCCGGTAAGAACGCTGCCCTGACCGTCGGCAACATTCTTCCTCTCGCC
TCCATGCCCGAGGGTACCGTCATCACCAACGTCGAGGAGAAGGCTGGTGA
CCGTGGTGCGCTTGGCCGTACCTCCGGTAACTACGTTACTGTTATTGGCC
ACAACCCCGAGGATGGCAAGACCCGTGTCAAGCTCCCCTCCGGTGCCAAG
AAGGTCATCAGGAACACCGCTCGCGGTATGGTTGGTATCGTTGCCGGTGG
TGGCCGTACCGACAAGCCTTTGCTCAAGGCTGGTCGTGCCAAGCACAAGT
TCGCCGTCAAGCGCAACTCTTGGCCCAAGACTCGTGGTGTTGCCATGAAC
CCCGTCGATCACCCTCACGGTGGTGGTAACACCAGCACATCGGGTAGGCC
TCGACCATCTCCCGCTACGCT
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