FC932505
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_SYNR3 (30S ribosomal protein S17 OS=Synechococcus sp. (strain RCC307) GN=rpsQ PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.980e-14 Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 2
Query: 443 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
+K VG VVS+KM+K+VVVAV+ F H +Y + V RT+++ HDE+N+C +GDRV
Sbjct: 3 VKERVGTVVSDKMEKTVVVAVENRFPHPIYKKTVSRTTRYKVHDEDNRCQVGDRV 57 HSP 2 Score: 31.5722 bits (70), Expect = 2.980e-14 Identity = 13/21 (61.90%), Postives = 17/21 (80.95%), Query Frame = 1
Query: 628 VRLDPSRPLSKHKHWAVAEIL 690
VR+ +RPLS+ K WAVAEI+
Sbjct: 57 VRITETRPLSRSKRWAVAEIM 77
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_SYNSC (30S ribosomal protein S17 OS=Synechococcus sp. (strain CC9605) GN=rpsQ PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 3.873e-14 Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 2
Query: 443 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
+K +G VVS+KM+K+VVVAV+ F H +Y + V RT+++ AHDE+N C +GDRV
Sbjct: 3 VKERIGTVVSDKMEKTVVVAVESRFPHPIYQKTVSRTTRYKAHDEDNTCRVGDRV 57 HSP 2 Score: 31.187 bits (69), Expect = 3.873e-14 Identity = 11/21 (52.38%), Postives = 17/21 (80.95%), Query Frame = 1
Query: 628 VRLDPSRPLSKHKHWAVAEIL 690
VR+ +RP+S+ K WA+AE+L
Sbjct: 57 VRITETRPMSRQKRWAIAEVL 77
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_THELT (30S ribosomal protein S17 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=rpsQ PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 3.873e-14 Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 2
Query: 446 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
K + G+VVSNKM K+VVV V R H VY +Y++R+ K+ AHDE N+C GD V
Sbjct: 4 KRLTGVVVSNKMDKTVVVEVTRKLEHPVYKKYIQRSKKYYAHDEKNECKAGDTV 57 HSP 2 Score: 31.9574 bits (71), Expect = 3.873e-14 Identity = 13/25 (52.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query: 628 VRLDPSRPLSKHKHWAVAEILKKHV 702
V ++ +RPLSK K W V E+LK+ V
Sbjct: 57 VLIEETRPLSKMKRWRVVEVLKREV 81
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_PELPD (30S ribosomal protein S17 OS=Pelobacter propionicus (strain DSM 2379) GN=rpsQ PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 6.543e-14 Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 2
Query: 458 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVSTL 616
G+VVS+KM K+VVV VDRL H VYN+Y+KR++K+ HDENN C IGDRV +
Sbjct: 12 GVVVSDKMDKTVVVKVDRLIKHPVYNKYIKRSAKYKVHDENNVCKIGDRVQII 64 HSP 2 Score: 22.3274 bits (46), Expect = 6.543e-14 Identity = 9/20 (45.00%), Postives = 13/20 (65.00%), Query Frame = 1
Query: 628 VRLDPSRPLSKHKHWAVAEI 687
V++ RPLSK K W + +I
Sbjct: 61 VQIIECRPLSKDKRWNLKQI 80
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_THEPX (30S ribosomal protein S17 OS=Thermoanaerobacter sp. (strain X514) GN=rpsQ PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 6.543e-14 Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 2
Query: 455 VGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVSTL 616
+G VVSNKMQK++VVAV+ H +Y + +KRT KF HDENN CN+GD V +
Sbjct: 10 IGTVVSNKMQKTIVVAVEDRVRHPLYGKTIKRTKKFKVHDENNVCNVGDIVKIM 63 HSP 2 Score: 28.8758 bits (63), Expect = 6.543e-14 Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 1
Query: 628 VRLDPSRPLSKHKHWAVAEILKK 696
V++ +RPLSK K W + EI+K+
Sbjct: 60 VKIMETRPLSKEKRWRLVEIVKR 82
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_THEP3 (30S ribosomal protein S17 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rpsQ PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 6.543e-14 Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 2
Query: 455 VGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVSTL 616
+G VVSNKMQK++VVAV+ H +Y + +KRT KF HDENN CN+GD V +
Sbjct: 10 IGTVVSNKMQKTIVVAVEDRVRHPLYGKTIKRTKKFKVHDENNVCNVGDIVKIM 63 HSP 2 Score: 28.8758 bits (63), Expect = 6.543e-14 Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 1
Query: 628 VRLDPSRPLSKHKHWAVAEILKK 696
V++ +RPLSK K W + EI+K+
Sbjct: 60 VKIMETRPLSKEKRWRLVEIVKR 82
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_PROMT (30S ribosomal protein S17 OS=Prochlorococcus marinus (strain NATL2A) GN=rpsQ PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 6.543e-14 Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 2
Query: 443 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
+K +VG VVS+KMQK+VVVAV+ F H +Y + + RT+++ AHD N C +GDRV
Sbjct: 3 LKEMVGTVVSDKMQKTVVVAVENRFPHPIYQKIISRTTRYKAHDAENHCKVGDRV 57 HSP 2 Score: 28.8758 bits (63), Expect = 6.543e-14 Identity = 11/23 (47.83%), Postives = 15/23 (65.22%), Query Frame = 1
Query: 628 VRLDPSRPLSKHKHWAVAEILKK 696
VR+ S P+S HK W V ++L K
Sbjct: 57 VRIKESPPISAHKRWTVTDVLVK 79
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_PROM1 (30S ribosomal protein S17 OS=Prochlorococcus marinus (strain NATL1A) GN=rpsQ PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 6.543e-14 Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 2
Query: 443 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
+K +VG VVS+KMQK+VVVAV+ F H +Y + + RT+++ AHD N C +GDRV
Sbjct: 3 LKEMVGTVVSDKMQKTVVVAVENRFPHPIYQKIISRTTRYKAHDAENHCKVGDRV 57 HSP 2 Score: 28.8758 bits (63), Expect = 6.543e-14 Identity = 11/23 (47.83%), Postives = 15/23 (65.22%), Query Frame = 1
Query: 628 VRLDPSRPLSKHKHWAVAEILKK 696
VR+ S P+S HK W V ++L K
Sbjct: 57 VRIKESPPISAHKRWTVTDVLVK 79
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_ROSCS (30S ribosomal protein S17 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=rpsQ PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 6.543e-14 Identity = 37/59 (62.71%), Postives = 42/59 (71.19%), Query Frame = 2
Query: 455 VGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGD--RVSTLMPL 625
VG VVSNKMQK+VVVAVD L H +Y + V+RTSKF AHDE QC IGD R+ PL
Sbjct: 11 VGRVVSNKMQKTVVVAVDYLKPHPLYRKIVRRTSKFHAHDE-QQCQIGDVVRIGETRPL 68 HSP 2 Score: 31.9574 bits (71), Expect = 6.543e-14 Identity = 13/24 (54.17%), Postives = 18/24 (75.00%), Query Frame = 1
Query: 628 VRLDPSRPLSKHKHWAVAEILKKH 699
VR+ +RPLSK K W V EI+K++
Sbjct: 60 VRIGETRPLSKTKRWEVVEIIKRN 83
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_PHOPR (30S ribosomal protein S17 OS=Photobacterium profundum GN=rpsQ PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 8.503e-14 Identity = 30/56 (53.57%), Postives = 44/56 (78.57%), Query Frame = 2
Query: 440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
Q + +G V+S+KM KS+VVA++R+ H +Y +Y+KRT+K AHDENN+CN+GD V
Sbjct: 4 QTRIQLGRVISSKMDKSIVVAIERMVKHPMYGKYIKRTTKLHAHDENNECNLGDTV 59 HSP 2 Score: 24.2534 bits (51), Expect = 8.503e-14 Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 1
Query: 628 VRLDPSRPLSKHKHWAVAEILKK 696
V + RPLSK K W + I++K
Sbjct: 59 VEVRECRPLSKTKSWTLVRIVEK 81 The following BLAST results are available for this feature:
BLAST of FC932505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 249
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932505 ID=FC932505; Name=FC932505; organism=Citrus clementina; type=EST; length=725bpback to top |