FC932516

Overview
NameFC932516
Unique NameFC932516
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932516 vs. ExPASy Swiss-Prot
Match: MCA1_LODEL (Metacaspase-1 OS=Lodderomyces elongisporus GN=MCA1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.800e-19
Identity = 62/155 (40.00%), Postives = 82/155 (52.90%), Query Frame = 3
Query:   93 KKAVLIGINYPGTKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQ---PTGRNIRRALGNLVRSAEPGDVLFVHYSGHGTRL----PAXXXXXXXXXXXXCIVPSDM---NLITDDDFRE-FVDQIPPGCEITVVSDSCHSGGLID 524
            KKA+L+GINY GT  EL+G +NDV  +   L+  +GF  ++I  L  TDD+  Q   PT +NI  A+  LV+ A P D LF HYSGHG +                    I P D      I DD   +  V  +PPGC +T + DSCHSG ++D
Sbjct:  149 KKALLVGINYIGTANELRGPINDVNNVEQFLLT-HGFKSDDIVKL--TDDQRVQRAIPTRQNILDAIQWLVKDARPNDSLFFHYSGHGGQTEDQPDQYGNYDEDDGYDEVIYPLDFQTNGFIVDDLLHDMMVKTLPPGCRMTALFDSCHSGSVLD 300          
BLAST of FC932516 vs. ExPASy Swiss-Prot
Match: MCA1_CANGA (Metacaspase-1 OS=Candida glabrata GN=MCA1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.978e-18
Identity = 56/149 (37.58%), Postives = 76/149 (51.01%), Query Frame = 3
Query:   93 KKAVLIGINYPGTKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQ-PTGRNIRRALGNLVRSAEPGDVLFVHYSGHGTRLPAXXXXXXXXXXXXCIVPSDMN----LITDDDFREFVDQIPPGCEITVVSDSCHSGGLID 524
            +KA+LIGINY G+K  L+GC+ND   ++  L    G+  E+I +L D      + P   NI RA+  LV+ A+P D LF HYSGHG +                I P D      LI D      V  +P G  +T + DSCHSG ++D
Sbjct:   98 RKALLIGINYIGSKNALRGCINDAHNIFNYLTTYCGYRPEDIVMLTDDQREMVKIPLKENIIRAMQWLVKDAQPNDALFFHYSGHGGQ-TKDLDGDEEDGMDDVIYPVDFESVGPLIDDTMHDIMVKSLPQGARLTALFDSCHSGTVLD 245          
BLAST of FC932516 vs. ExPASy Swiss-Prot
Match: MCA2_ARATH (Metacaspase-2 OS=Arabidopsis thaliana GN=AMC2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.312e-17
Identity = 53/149 (35.57%), Postives = 78/149 (52.35%), Query Frame = 3
Query:   93 KKAVLIGINYPGTKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTD-DRSTQPTGRNIRRALGNLVRSAEPGDVLFVHYSGHGTRLPAXXXXXXXXXXXXCIVPSD---MNLITDDDFR-EFVDQIPPGCEITVVSDSCHSGGLID 524
            K+AV++G++Y  TK ELKGC+ND   M   L+ R+ F E  I +L + + D    PT  NI  A+  LV S +PGD L  H+SGHG                  ++P D     +I DD+     V  +P G ++  + D+CHSG ++D
Sbjct:  116 KRAVIVGVSYKNTKDELKGCINDANCMKFMLMKRFQFPESCILMLTEEEADPMRWPTKNNITMAMHWLVLSCKPGDSLVFHFSGHGNN-QMDDNGDEVDGFDETLLPVDHRTSGVIVDDEINATIVRPLPYGVKLHAIVDACHSGTVMD 263          
BLAST of FC932516 vs. ExPASy Swiss-Prot
Match: MCA1_ARATH (Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.086e-16
Identity = 53/149 (35.57%), Postives = 82/149 (55.03%), Query Frame = 3
Query:   93 KKAVLIGINYPGTKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTD-DRSTQPTGRNIRRALGNLVRSAEPGDVLFVHYSGHGTRLPAXXXXXXXXXXXXCIVPSD---MNLITDDDFR-EFVDQIPPGCEITVVSDSCHSGGLID 524
            K+AV+ GI+Y  ++ ELKGC+ND K M   L++++ FS ++I +L + + D    PT +N+R AL  LV+    GD L  HYSGHG+R                + P D     +I DD+     V  +P G ++  + D+CHSG ++D
Sbjct:   80 KRAVICGISYRFSRHELKGCINDAKCMRHLLINKFKFSPDSILMLTEEETDPYRIPTKQNMRMALYWLVQGCTAGDSLVFHYSGHGSR-QRNYNGDEVDGYDETLCPLDFETQGMIVDDEINATIVRPLPHGVKLHSIIDACHSGTVLD 227          
BLAST of FC932516 vs. ExPASy Swiss-Prot
Match: MCA3_ARATH (Metacaspase-3 OS=Arabidopsis thaliana GN=AMC3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15
Identity = 53/150 (35.33%), Postives = 79/150 (52.67%), Query Frame = 3
Query:   93 KKAVLIGINYPGTKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQ--PTGRNIRRALGNLVRSAEPGDVLFVHYSGHGTRLPAXXXXXXXXXXXXCIVPSDM----NLITDDDFREFVDQIPPGCEITVVSDSCHSGGLID 524
            K+AVL G+NY G    LKGC++D K M + LV + GF  ++I +L + D+ S Q  PT RNIR+A+  LV      D L  H+SGHG++                + P D      +I D+  R  V  +  G ++  V D+C+SG ++D
Sbjct:   90 KRAVLCGVNYKGKSYSLKGCISDAKSMRSLLVQQMGFPIDSILMLTE-DEASPQRIPTKRNIRKAMRWLVEGNRARDSLVFHFSGHGSQ-QNDYNGDEIDGQDEALCPLDHETEGKIIDDEINRILVRPLVHGAKLHAVIDACNSGTVLD 237          
The following BLAST results are available for this feature:
BLAST of FC932516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
MCA1_LODEL6.800e-1940.00Metacaspase-1 OS=Lodderomyces elongisporus GN=MCA1... [more]
MCA1_CANGA1.978e-1837.58Metacaspase-1 OS=Candida glabrata GN=MCA1 PE=3 SV=... [more]
MCA2_ARATH8.312e-1735.57Metacaspase-2 OS=Arabidopsis thaliana GN=AMC2 PE=2... [more]
MCA1_ARATH1.086e-1635.57Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1... [more]
MCA3_ARATH7.780e-1535.33Metacaspase-3 OS=Arabidopsis thaliana GN=AMC3 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC34209D11EF PostHarveN Citrus clementina cDNA clone C34209D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932516 ID=FC932516; Name=FC932516; organism=Citrus clementina; type=EST; length=725bp
GATTCAAGTAGATCAGATCAAATCCAACACTCGAGATCCAAAAGAAAGAA
ACGTTTCTTTCGAGATTATCAGAAGAGGAAAACAAAATGACGAAAAAAGC
GGTGTTAATAGGCATAAACTACCCGGGAACGAAAGCGGAGCTGAAGGGGT
GCGTTAACGACGTTAAACGGATGTATGCATGTTTGGTGGATCGTTACGGA
TTCTCGGAGGAGAACATAACGGTGTTGATCGATACGGATGATAGGTCTAC
CCAGCCGACTGGGCGGAATATTAGGAGGGCTTTGGGCAATTTGGTGCGAT
CGGCTGAGCCCGGTGACGTGCTGTTTGTTCACTACAGCGGGCATGGGACC
AGGCTTCCTGCTGAGACTGGGGAGGACGACGATACTGGTTATGATGAGTG
CATTGTTCCTTCTGATATGAATCTTATTACTGATGATGATTTCAGGGAGT
TTGTAGACCAAATCCCACCAGGTTGTGAGATAACAGTTGTGTCTGATTCT
TGCCATAGTGGTGGCCTTATTGATGAGGCTAAGGAACAGATTGGGGAGAG
CACAAGGCGTGATGAAGAGGAAGAATCTGGTTCTGGTTTTAACTTCAAAA
GCTTCTTGCACAAGAAAGTGGAAAATGCATTTGAATCTCGTGGAATTCAC
ATTCCTTCTGGGCTGCGCCATCACCGCCCTAGTGGTGATGAAGATGTTGA
AGATCGTGAAAGTGAAGCCGGATAT
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