FC932523

Overview
NameFC932523
Unique NameFC932523
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.933e-33
Identity = 73/128 (57.03%), Postives = 93/128 (72.66%), Query Frame = 3
Query:  180 SPTSLGSVTGIS--KTFGLKCSP---NFQASMAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            +P SL S+   +    FGLK          +MA YK+K I P+GE  E E  +D Y+LDAAEEAG+DLPYSCRAG+CS+CAGK+VSGSVDQSD SFLDD Q+  G++LTC +YPTSD  I++HKEE++
Sbjct:   21 APISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEGEL-EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDI 147          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_SILPR (Ferredoxin, chloroplastic OS=Silene pratensis GN=PETF PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.003e-33
Identity = 74/150 (49.33%), Postives = 102/150 (68.00%), Query Frame = 3
Query:  102 MSTVTLSAPCMVKAAPRNQLSRNLIKSPTSLGSVTGISKTFGLKCSPNFQAS-MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            +ST+++SA  + K  P    S      PT++G        FGLK     + + MA YK+ LI  +     F+  +D Y+LD AEE G+DLPYSCRAG+CS+CAGK+V+GSVDQSD SFLDD+Q+EAG++LTC +YP++D  I++HKEEEL
Sbjct:    5 LSTLSVSASLLPKQQPMVASSL-----PTNMGQAL-----FGLKAGSRGRVTAMATYKVTLITKESGTVTFDCPDDVYVLDQAEEEGIDLPYSCRAGSCSSCAGKVVAGSVDQSDQSFLDDDQIEAGWVLTCAAYPSADVTIETHKEEEL 144          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_HORVU (Ferredoxin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.003e-33
Identity = 66/96 (68.75%), Postives = 80/96 (83.33%), Query Frame = 3
Query:  261 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            A YK+KL+ P+GE  E E  +D YILD AEE G+DLPYSCRAG+CS+CAGKLVSG +DQSD SFLDD+QME G++LTC +YP SD VI++HKEEEL
Sbjct:    1 ATYKVKLVTPEGEV-ELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEEGWVLTCAAYPKSDVVIETHKEEEL 95          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.003e-33
Identity = 71/123 (57.72%), Postives = 94/123 (76.42%), Query Frame = 3
Query:  186 TSLGSVTGISKT-FGLKCSPNFQAS-MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            TSL +++ + +  FGLK   N + + MA YK+KLI P+G   EFE  +D YILD AEE G DLPYSCRAG+CS+CAGK+ +GSVDQSDG+FLD++Q  AG++LTC++YP  D  I++HKEEEL
Sbjct:   21 TSLKAISNVGEALFGLKSGRNGRITCMASYKVKLITPEGPI-EFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFVLTCVAYPKGDVTIETHKEEEL 142          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER1_ANAVT (Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petF1 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 5.003e-33
Identity = 66/98 (67.35%), Postives = 82/98 (83.67%), Query Frame = 3
Query:  258 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            MA +K+ LI   +G  +  +  +D+YILDAAEE G DLP+SCRAGACSTCAGKLVSG+VDQSD SFLDD+Q+EAGY+LTC++YPTSD  IQ+HKEE+L
Sbjct:    1 MATFKVTLINEAEGTSNTIDVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVTIQTHKEEDL 98          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_BRANA (Ferredoxin OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.535e-33
Identity = 65/96 (67.71%), Postives = 81/96 (84.38%), Query Frame = 3
Query:  261 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            A YK+K I P+GE+ E E  +D Y+LDAAEEAG+DLPYSCRAG+CS+CAGK+VSG VDQSD SFLDD+Q+  G++LTC +YPTSD  I++HKEEEL
Sbjct:    1 ATYKVKFITPEGEQ-EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEEL 95          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER3_RAPSA (Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.115e-32
Identity = 63/96 (65.62%), Postives = 82/96 (85.42%), Query Frame = 3
Query:  261 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            A YK+K I P+GE+ E E  +D Y+LDAAEEAG+DLPYSCRAG+CS+CAGK+VSGSVDQSD SFLDD+Q+  G++LTC +YPTSD  I++H+EE++
Sbjct:    1 ATYKVKFITPEGEQ-EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDDQIAEGFVLTCAAYPTSDVTIETHREEDM 95          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER1_NOSMU (Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.115e-32
Identity = 62/95 (65.26%), Postives = 80/95 (84.21%), Query Frame = 3
Query:  264 VYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            VYK+ L+  +G E   +  +D+YILD AE+ G+DLPYSCRAGACSTCAGK+VSG+VDQSD SFLDD+Q+E GY+LTC++YPTSD  I++HKEE+L
Sbjct:    4 VYKVTLVDQEGTETTIDVPDDEYILDIAEDQGLDLPYSCRAGACSTCAGKIVSGTVDQSDQSFLDDDQIEKGYVLTCVAYPTSDLKIETHKEEDL 98          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER1_CYAPA (Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 1.115e-32
Identity = 64/98 (65.31%), Postives = 82/98 (83.67%), Query Frame = 3
Query:  258 MAVYKIKLI-GPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            MAVYK++LI   +G +   E  +D+YILDAAEE G+DLPYSCRAGACSTCAGK+V G+VDQSD SFLDD Q+ AGY+LTC++YP+SDC +++H+EE L
Sbjct:    1 MAVYKVRLICEEQGLDTTIECPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKVVEGTVDQSDQSFLDDAQLAAGYVLTCVAYPSSDCTVKTHQEESL 98          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_SPIPL (Ferredoxin OS=Spirulina platensis PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.901e-32
Identity = 64/98 (65.31%), Postives = 80/98 (81.63%), Query Frame = 3
Query:  258 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            MA YK+ LI   +G     +  +D YILDAAEEAG+DLPYSCRAGACSTCAG + SG++DQSD SFLDD+Q+EAGY+LTC++YPTSDC I++H+EE L
Sbjct:    1 MATYKVTLINEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGTITSGTIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIKTHQEEGL 98          
The following BLAST results are available for this feature:
BLAST of FC932523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER2_ARATH2.933e-3357.03Ferredoxin-2, chloroplastic OS=Arabidopsis thalian... [more]
FER_SILPR5.003e-3349.33Ferredoxin, chloroplastic OS=Silene pratensis GN=P... [more]
FER_HORVU5.003e-3368.75Ferredoxin OS=Hordeum vulgare PE=1 SV=1[more]
FER1_SOLLC5.003e-3357.72Ferredoxin-1, chloroplastic OS=Solanum lycopersicu... [more]
FER1_ANAVT5.003e-3367.35Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 2... [more]
FER_BRANA6.535e-3367.71Ferredoxin OS=Brassica napus PE=1 SV=1[more]
FER3_RAPSA1.115e-3265.63Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1[more]
FER1_NOSMU1.115e-3265.26Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2[more]
FER1_CYAPA1.115e-3265.31Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 S... [more]
FER_SPIPL1.901e-3265.31Ferredoxin OS=Spirulina platensis PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC34209E06EF PostHarveN Citrus clementina cDNA clone C34209E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932523 ID=FC932523; Name=FC932523; organism=Citrus clementina; type=EST; length=739bp
GCAACAACACAACGCCAATTCATTTCACTTGACCGCCACCCACCAACCCA
CTCGCCACCTCGCGCGCTCCGCCGCTCGATCTCTTGCTTTTCTGGGTAAA
GATGTCGACTGTGACACTTAGCGCCCCGTGCATGGTTAAAGCTGCACCCA
GAAATCAACTATCAAGGAACTTAATCAAGAGCCCAACCTCACTTGGATCT
GTTACGGGCATCTCCAAGACCTTTGGCCTGAAATGCTCTCCCAATTTCCA
AGCATCAATGGCTGTCTACAAGATTAAGCTGATTGGACCTAAGGGTGAAG
AGCATGAGTTTGAGGCCCAGGAAGACCAGTACATCCTCGATGCAGCTGAG
GAAGCAGGAGTCGACCTGCCCTATTCCTGCCGCGCTGGTGCTTGCTCGAC
GTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTGACCAGTCAGATGGTTCCT
TCCTCGATGACAATCAAATGGAGGCTGGTTATCTGCTGACTTGCATTTCA
TACCCGACTTCAGATTGCGTGATTCAGTCTCACAAGGAAGAAGAGCTTTG
CTGAGTGCCTTTGCTGTCAGTTGGTTTAGGGTTTTTCAAGTATGAACTGT
GATCAAGTGCCTGAGTATGNCTGATAGGTTTCTCATGGGCCTACAATATT
TTTTAGATTTCAGCGTGTTGTCTGGTGCAATGGAATCTGTAATTTTTCAT
TTAGTTATACTATTACTGGCATTTTGGGATTTCATTTCA
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