FC932523

Overview
NameFC932523
Unique NameFC932523
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_THEVL (Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=petF1 PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.243e-32
Identity = 62/97 (63.92%), Postives = 78/97 (80.41%), Query Frame = 3
Query:  258 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            MA YK+ L+ P G E   +  ED+YILD AEE G+DLP+SCRAGACSTCAGKL+ G VDQSD SFLDD+Q+E G++LTC++YP SDC I +++EEEL
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_THEEB (Ferredoxin-1 OS=Thermosynechococcus elongatus (strain BP-1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.243e-32
Identity = 62/97 (63.92%), Postives = 78/97 (80.41%), Query Frame = 3
Query:  258 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            MA YK+ L+ P G E   +  ED+YILD AEE G+DLP+SCRAGACSTCAGKL+ G VDQSD SFLDD+Q+E G++LTC++YP SDC I +++EEEL
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_SYNEN (Ferredoxin-1 OS=Synechococcus elongatus naegeli GN=petF1 PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.243e-32
Identity = 62/97 (63.92%), Postives = 78/97 (80.41%), Query Frame = 3
Query:  258 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            MA YK+ L+ P G E   +  ED+YILD AEE G+DLP+SCRAGACSTCAGKL+ G VDQSD SFLDD+Q+E G++LTC++YP SDC I +++EEEL
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_SCEQU (Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.243e-32
Identity = 63/96 (65.62%), Postives = 80/96 (83.33%), Query Frame = 3
Query:  261 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            A YK+ L  P G++   E  +D YILDAAEEAG+DLPYSCRAGACS+CAGK+ +G+VDQSD SFLDD+QM+ G++LTC++YPTSDC I +HKEE+L
Sbjct:    1 ATYKVTLKTPSGDQ-TIECPDDTYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTVDQSDQSFLDDSQMDGGFVLTCVAYPTSDCTIATHKEEDL 95          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_GUITH (Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 4.236e-32
Identity = 64/97 (65.98%), Postives = 80/97 (82.47%), Query Frame = 3
Query:  258 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            MA YK+KL G +G +   +  +DQYILDAAEE G+DLPYSCRAGACSTCAGK+ +GSVDQSD SFLDD+Q+  G++LTC++YPTSDC I +H+EE L
Sbjct:    1 MATYKVKLSG-EGVDKTIDCPDDQYILDAAEEQGIDLPYSCRAGACSTCAGKVAAGSVDQSDQSFLDDSQIGDGFVLTCVAYPTSDCTILTHQEEGL 96          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER2_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.236e-32
Identity = 66/96 (68.75%), Postives = 78/96 (81.25%), Query Frame = 3
Query:  264 VYKIKLIGPK-GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            +YKI+L+  K G +       DQYILDAAEE GVDLPYSCRAGACSTCAGKLV GSVDQSD SFLD+ Q+  G++LTC++YPTSDCVIQ+H+EE L
Sbjct:    1 MYKIQLVNQKEGVDVTINCPGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQSDQSFLDEEQINNGFILTCVAYPTSDCVIQTHQEEAL 96          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_SAMNI (Ferredoxin OS=Sambucus nigra PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.532e-32
Identity = 64/96 (66.67%), Postives = 80/96 (83.33%), Query Frame = 3
Query:  261 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            A YK+KLI P G + EFE  +D YIL+ AEE G+D+PYSCRAG+CS+CAGKLV+GSVDQSD SFLDD Q+E G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ASYKVKLITPDGPQ-EFECPDDVYILEHAEELGIDIPYSCRAGSCSSCAGKLVAGSVDQSDQSFLDDEQIEEGWVLTCVAYPKSDVTIETHKEEEL 95          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_ARCLA (Ferredoxin OS=Arctium lappa PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.532e-32
Identity = 67/97 (69.07%), Postives = 84/97 (86.60%), Query Frame = 3
Query:  261 AVYKIKLIGPKGEEHEFEAQEDQYILD-AAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            A YK+ LI P+G++ EFE  +D YILD AAEE G DLPYSCRAG+CS+CAGK+ +GSVDQSDGS+LDD+QMEAG++LTC++YPTSD  I++HKEEEL
Sbjct:    1 ATYKVTLITPEGKQ-EFEVPDDVYILDHAAEEVG-DLPYSCRAGSCSSCAGKVTAGSVDQSDGSYLDDDQMEAGWVLTCVAYPTSDVTIETHKEEEL 95          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER2_SPIOL (Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.225e-32
Identity = 64/96 (66.67%), Postives = 78/96 (81.25%), Query Frame = 3
Query:  261 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            A YK+ L+ P G +   E  +D+YILDAAEE G+DLPYSCRAGACS+CAGK+ SGSVDQSD SFL+D QME G++LTCI+YPT D  I++HKEEEL
Sbjct:    1 ATYKVTLVTPSGSQ-VIECGDDEYILDAAEEKGMDLPYSCRAGACSSCAGKVTSGSVDQSDQSFLEDGQMEEGWVLTCIAYPTGDVTIETHKEEEL 95          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_SYNLI (Ferredoxin OS=Synechococcus lividus PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 9.436e-32
Identity = 63/97 (64.95%), Postives = 78/97 (80.41%), Query Frame = 3
Query:  258 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            MA YK+ L+ P GE    +  ED+YILD AEE G+DLP+SCRAGACSTCAGKL+ G VDQSD SFLDD+Q+E G++LTC++YP SDC I +H+EEEL
Sbjct:    1 MATYKVTLVRPDGET-TIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTHQEEEL 96          
The following BLAST results are available for this feature:
BLAST of FC932523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_THEVL3.243e-3263.92Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=pe... [more]
FER_THEEB3.243e-3263.92Ferredoxin-1 OS=Thermosynechococcus elongatus (str... [more]
FER_SYNEN3.243e-3263.92Ferredoxin-1 OS=Synechococcus elongatus naegeli GN... [more]
FER_SCEQU3.243e-3265.63Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1[more]
FER_GUITH4.236e-3265.98Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3[more]
FER2_CYACA4.236e-3268.75Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER_SAMNI5.532e-3266.67Ferredoxin OS=Sambucus nigra PE=1 SV=1[more]
FER_ARCLA5.532e-3269.07Ferredoxin OS=Arctium lappa PE=1 SV=1[more]
FER2_SPIOL7.225e-3266.67Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1[more]
FER_SYNLI9.436e-3264.95Ferredoxin OS=Synechococcus lividus PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC34209E06EF PostHarveN Citrus clementina cDNA clone C34209E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932523 ID=FC932523; Name=FC932523; organism=Citrus clementina; type=EST; length=739bp
GCAACAACACAACGCCAATTCATTTCACTTGACCGCCACCCACCAACCCA
CTCGCCACCTCGCGCGCTCCGCCGCTCGATCTCTTGCTTTTCTGGGTAAA
GATGTCGACTGTGACACTTAGCGCCCCGTGCATGGTTAAAGCTGCACCCA
GAAATCAACTATCAAGGAACTTAATCAAGAGCCCAACCTCACTTGGATCT
GTTACGGGCATCTCCAAGACCTTTGGCCTGAAATGCTCTCCCAATTTCCA
AGCATCAATGGCTGTCTACAAGATTAAGCTGATTGGACCTAAGGGTGAAG
AGCATGAGTTTGAGGCCCAGGAAGACCAGTACATCCTCGATGCAGCTGAG
GAAGCAGGAGTCGACCTGCCCTATTCCTGCCGCGCTGGTGCTTGCTCGAC
GTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTGACCAGTCAGATGGTTCCT
TCCTCGATGACAATCAAATGGAGGCTGGTTATCTGCTGACTTGCATTTCA
TACCCGACTTCAGATTGCGTGATTCAGTCTCACAAGGAAGAAGAGCTTTG
CTGAGTGCCTTTGCTGTCAGTTGGTTTAGGGTTTTTCAAGTATGAACTGT
GATCAAGTGCCTGAGTATGNCTGATAGGTTTCTCATGGGCCTACAATATT
TTTTAGATTTCAGCGTGTTGTCTGGTGCAATGGAATCTGTAATTTTTCAT
TTAGTTATACTATTACTGGCATTTTGGGATTTCATTTCA
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