FC932593

Overview
NameFC932593
Unique NameFC932593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932593 vs. ExPASy Swiss-Prot
Match: G3P_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Bos taurus GN=GAPDH PE=1 SV=4)

HSP 1 Score: 318.931 bits (816), Expect = 1.657e-86
Identity = 156/232 (67.24%), Postives = 182/232 (78.45%), Query Frame = 2
Query:    2 VGINGFGRIGRLVLRVAAFRDNVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVYEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVP 697
            VG+NGFGRIGRLV R A     VD+VA+NDPFID  YM YMF+YDSTHG F GT+   ++  L INGK I +F +RDPA I WGD G +YVVES+GVFTT+ KA AH+KGGAK+V+ISAPSADAPMFV+GVN + Y   + IVSNASCTTNCLAPLAKV+++ FGI+EGLM             DGPS K WR GRGA+QNIIP+STGAAKAVGKV+P+LNGKLTGMAFRVP
Sbjct:    4 VGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFNGTVKA-ENGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYNNTLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP 234          
BLAST of FC932593 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 318.931 bits (816), Expect = 1.657e-86
Identity = 158/232 (68.10%), Postives = 183/232 (78.88%), Query Frame = 2
Query:    2 VGINGFGRIGRLVLRVAAFRDNVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVYEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVP 697
            VGINGFGRIGR+V R A     VDVVAVNDPFI+  Y AYM KYDSTHG FKGTI   ++  + +NGK I+ F++RDPA IPWG  G DY+VES+GVFTT  KA+AH+KGGAKKVVISAPSADAPMFV+GVN  +Y  ++N++SNASCTTNCLAPLAKV+ ++FGI+EGLM             D PS KDWRGGR A+QNIIPSSTGAAKAVGKV+P LNGKLTGMA RVP
Sbjct:    5 VGINGFGRIGRIVFRNAINHGEVDVVAVNDPFIETHYAAYMLKYDSTHGQFKGTIETYEEGLI-VNGKKIRFFAERDPAAIPWGTTGADYIVESTGVFTTQEKAAAHLKGGAKKVVISAPSADAPMFVMGVNNTSYTKDINVLSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSYTATQKVVDAPSSKDWRGGRTAAQNIIPSSTGAAKAVGKVIPTLNGKLTGMAMRVP 235          
BLAST of FC932593 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.165e-86
Identity = 160/232 (68.97%), Postives = 182/232 (78.45%), Query Frame = 2
Query:    2 VGINGFGRIGRLVLRVAAFRDNVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVYEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVP 697
            VGINGFGRIGR+VLR A     V+VVAVNDPFID +Y AYMFKYDSTHG FKG +   D   + I+GK I+VF +RDP+ IPWG  G DYVVES+GVFT    ASAH+KGGAKKV+ISAPS DAPMFVVGVN   YKP+M ++SNASCTTNCLAPLAKVV +++GI+EGLM             DGPS KDWRGGR AS NIIPSSTGAAKAVGKV+P+LNGKLTGM+ RVP
Sbjct:    5 VGINGFGRIGRIVLRNALKNPEVEVVAVNDPFIDTEYAAYMFKYDSTHGRFKGKVEAKDGGLI-IDGKHIQVFGERDPSNIPWGKAGADYVVESTGVFTGKEAASAHLKGGAKKVIISAPSGDAPMFVVGVNLDAYKPDMTVISNASCTTNCLAPLAKVVNDKYGIIEGLMTTVHSITATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVIPELNGKLTGMSLRVP 235          
BLAST of FC932593 vs. ExPASy Swiss-Prot
Match: G3P_PHARH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffia rhodozyma GN=GPD PE=3 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.165e-86
Identity = 159/232 (68.53%), Postives = 178/232 (76.72%), Query Frame = 2
Query:    2 VGINGFGRIGRLVLRVAAFRDNVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVYEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVP 697
            VGINGFGRIGR+VLR A    ++DVVA+NDPFID +YM YMFKYDSTHGVFKG++ +  D  L I GK I V+ +RDPA I WG  G DYVVES+GVFTT  KA  H+KGGAKKVVISAPSADAPMFV GVN   Y P   +VSNASCTTNCLAPL KV+++ + I+EGLM             DGPS KDWRGGRGA  NIIPSSTGAAKAVGKV+P LNGKLTGMAFRVP
Sbjct:    5 VGINGFGRIGRIVLRNAIIHGDIDVVAINDPFIDLEYMVYMFKYDSTHGVFKGSVEI-KDGKLVIEGKPIVVYGERDPANIQWGAAGADYVVESTGVFTTQEKAELHLKGGAKKVVISAPSADAPMFVCGVNLDKYDPKYTVVSNASCTTNCLAPLGKVIHDNYTIVEGLMTTVHATTATQKTVDGPSNKDWRGGRGAGANIIPSSTGAAKAVGKVIPSLNGKLTGMAFRVP 235          
BLAST of FC932593 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.165e-86
Identity = 161/233 (69.10%), Postives = 182/233 (78.11%), Query Frame = 2
Query:    2 VGINGFGRIGRLVLRVAAFRDNVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVYEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVP 697
            +GINGFGRIGRLV RVA  RD++++VAVNDPFI   YM YMFKYDS HG +K   + V D +TL    K + VF  R+P EIPWG+ GV+YVVES+GVFT   KA+AH+KGGAKKVVI+APS DAPMFVVGVNE  YKP++ IVSNASCTTNCLAPLAKV+ + FGI+EGLM             DGPS KDWRGGRGA  NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVP
Sbjct:    9 IGINGFGRIGRLVARVALLRDDIELVAVNDPFISTDYMTYMFKYDSVHGQWKKHEVKVKDSNTLLFGEKAVTVFGCRNPEEIPWGETGVEYVVESTGVFTDKEKAAAHIKGGAKKVVITAPSKDAPMFVVGVNEHEYKPDLAIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSNKDWRGGRGAGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 241          
BLAST of FC932593 vs. ExPASy Swiss-Prot
Match: G3P_FELCA (Glyceraldehyde-3-phosphate dehydrogenase OS=Felis catus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 318.161 bits (814), Expect = 2.827e-86
Identity = 156/232 (67.24%), Postives = 183/232 (78.88%), Query Frame = 2
Query:    2 VGINGFGRIGRLVLRVAAFRDNVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVYEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVP 697
            VG+NGFGRIGRLV R A     VD+VA+NDPFID  YM YMF+YDSTHG F GT+   ++  L INGK I +F +RDPA I WGD G +YVVES+GVFTT+ KA AH+KGGAK+V+ISAPSADAPMFV+GVN + Y  ++ IVSNASCTTNCLAPLAKV+++ FGI+EGLM             DGPS K WR GRGA+QNIIP+STGAAKAVGKV+P+LNGKLTGMAFRVP
Sbjct:    4 VGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKA-ENGKLVINGKPITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP 234          
BLAST of FC932593 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 317.775 bits (813), Expect = 3.692e-86
Identity = 158/232 (68.10%), Postives = 181/232 (78.02%), Query Frame = 2
Query:    2 VGINGFGRIGRLVLRVAAFRDNVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVYEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVP 697
            VGINGFGRIGR+V R A     VDVVAVNDPFI+  Y AYM KYDS HG FKGTI   D+  + +NGK I+  ++RDPA IPWG  G +Y+VES+GVFTT  KASAH+KGGAKKVVISAPSADAPMFV+GVN +TYK ++ ++SNASCTTNCLAPLAKV+ + FGI+EGLM             DGPS KDWRGGR A+ NIIPSSTGAAKAVGKV+P LNGKLTGMA RVP
Sbjct:    5 VGINGFGRIGRIVFRNAIEAGTVDVVAVNDPFIETHYAAYMLKYDSQHGQFKGTIETYDEGLI-VNGKKIRFHTERDPANIPWGQDGAEYIVESTGVFTTQEKASAHLKGGAKKVVISAPSADAPMFVMGVNNETYKKDIQVLSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHSYTATQKVVDGPSAKDWRGGRTAATNIIPSSTGAAKAVGKVIPSLNGKLTGMAMRVP 235          
BLAST of FC932593 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 3.692e-86
Identity = 161/233 (69.10%), Postives = 181/233 (77.68%), Query Frame = 2
Query:    2 VGINGFGRIGRLVLRVAAFRDNVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVYEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVP 697
            +GINGFGRIGRLV RVA  RD+V++VAVNDPFI  +YM YMFKYDS HG +K   +   DD TL    K + VF  R+P EIPWG+ G DYVVES+GVFT   KA+AH+KGGAKKV+ISAPS DAPMFVVGVNEK YK ++ +VSNASCTTNCLAPLAKV+ + FGI+EGLM             DGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVP
Sbjct:    6 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISVEYMTYMFKYDSVHGQWKHHELKAKDDKTLLFGEKPVTVFGIRNPEEIPWGEAGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKSDLTVVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSMTATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 238          
BLAST of FC932593 vs. ExPASy Swiss-Prot
Match: G3P_PIG (Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4)

HSP 1 Score: 317.39 bits (812), Expect = 4.822e-86
Identity = 156/232 (67.24%), Postives = 182/232 (78.45%), Query Frame = 2
Query:    2 VGINGFGRIGRLVLRVAAFRDNVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVYEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVP 697
            VG+NGFGRIGRLV R A     VD+VA+NDPFID  YM YMF+YDSTHG F GT+   ++  L INGK I +F +RDPA I WGD G  YVVES+GVFTT+ KA AH+KGGAK+V+ISAPSADAPMFV+GVN + Y  ++ IVSNASCTTNCLAPLAKV+++ FGI+EGLM             DGPS K WR GRGA+QNIIP+STGAAKAVGKV+P+LNGKLTGMAFRVP
Sbjct:    4 VGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA-ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP 234          
BLAST of FC932593 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 4.822e-86
Identity = 161/233 (69.10%), Postives = 181/233 (77.68%), Query Frame = 2
Query:    2 VGINGFGRIGRLVLRVAAFRDNVDVVAVNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTIAKASAHMKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVYEEFGILEGLMXXXXXXXXXXXXXDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVP 697
            +GINGFGRIGRLV RVA  RD++++V VNDPFI   YM+YMFKYDS HG +K   +NV D  TL    K + VF  R+P EIPWG+ G +YVVES+GVFT   KASAH+K GAKKVVISAPS DAPMFVVGVNE  YK ++NIVSNASCTTNCLAPLAKV+ ++FGI+EGLM             DGPS KDWRGGRGA  NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVP
Sbjct:    9 IGINGFGRIGRLVARVALTRDDIELVGVNDPFISTDYMSYMFKYDSVHGKWKHHEVNVKDSKTLLFGEKSVAVFGCRNPEEIPWGEVGAEYVVESTGVFTDKEKASAHLKAGAKKVVISAPSKDAPMFVVGVNEHQYKSDVNIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSITATQKTVDGPSNKDWRGGRGAGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 241          
The following BLAST results are available for this feature:
BLAST of FC932593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 349
Match NameE-valueIdentityDescription
G3P_BOVIN1.657e-8667.24Glyceraldehyde-3-phosphate dehydrogenase OS=Bos ta... [more]
G3P_ASPNG1.657e-8668.10Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_YARLI2.165e-8668.97Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_PHARH2.165e-8668.53Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffi... [more]
G3PC_GINBI2.165e-8669.10Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_FELCA2.827e-8667.24Glyceraldehyde-3-phosphate dehydrogenase OS=Felis ... [more]
G3P_EMENI3.692e-8668.10Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3PC_PETHY3.692e-8669.10Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_PIG4.822e-8667.24Glyceraldehyde-3-phosphate dehydrogenase OS=Sus sc... [more]
G3PC_PINSY4.822e-8669.10Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC34210C09EF PostHarveN Citrus clementina cDNA clone C34210C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932593 ID=FC932593; Name=FC932593; organism=Citrus clementina; type=EST; length=715bp
GGTCGGAATCAATGGTTTTGGTCGGATTGGAAGGTTGGTTTTGCGAGTAG
CAGCCTTCAGGGATAATGTTGACGTTGTGGCGGTCAATGATCCTTTTATT
GATGCCAAATACATGGCTTACATGTTTAAGTATGATTCTACTCATGGAGT
TTTCAAGGGAACCATCAATGTCGTGGATGACTCCACCTTAGAAATTAATG
GGAAGCTGATTAAAGTTTTCAGCAAAAGGGACCCGGCAGAGATCCCTTGG
GGTGACTATGGGGTTGATTATGTTGTTGAATCTTCTGGAGTCTTTACAAC
AATTGCGAAGGCTTCAGCTCACATGAAGGGTGGTGCAAAAAAGGTGGTAA
TATCAGCTCCATCAGCTGATGCACCAATGTTTGTGGTAGGAGTGAATGAA
AAGACATACAAGCCAAACATGAACATTGTTTCTAATGCAAGTTGTACTAC
CAATTGTCTCGCTCCTCTTGCTAAGGTGGTTTATGAGGAGTTTGGAATTC
TTGAAGGCTTAATGACCACTGTTCATGCAACTACAGCTACACAAAAGACT
GTAGATGGTCCTTCGATGAAGGATTGGAGAGGAGGGCGTGGAGCTTCACA
AAATATCATTCCTAGTTCAACTGGTGCTGCCAAGGCTGTTGGTAAAGTTC
TTCCAGATCTCAACGGAAAGCTTACTGGCATGGCCTTCCGTGTCCCACTC
CNTATGTGTCTGTTG
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