FC932640

Overview
NameFC932640
Unique NameFC932640
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: AATC_DICDI (Aspartate aminotransferase, cytoplasmic OS=Dictyostelium discoideum GN=aatB PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.583e-39
Identity = 84/180 (46.67%), Postives = 120/180 (66.67%), Query Frame = 1
Query:  154 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTI-YIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 690
            ++F  +   P DPILGV+ A+  DT P K++  VGAYR E GKP VL  V +AE+ L+      KEYLPI G+ +FNKLSAKL+ G D+   K+ R+ TVQ LSGTG+LR+G  F+ ++    T+ YI +P+W NH  +   +G+    Y YYDP T+GL+F G++ D+RAAP+G++ +L
Sbjct:   39 TLFANVPLGPVDPILGVSTAFKADTDPRKVDTSVGAYRDENGKPYVLKCVFEAEKRLLGAP---KEYLPIDGIPEFNKLSAKLLYG-DAMVGKEKRMVTVQALSGTGALRIGIIFIRKYLPAGTVVYISRPSWTNHHNICKESGVQSAEYAYYDPKTKGLDFTGMINDMRAAPNGSVFVL 214          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: AAT1_ARATH (Aspartate aminotransferase, mitochondrial OS=Arabidopsis thaliana GN=ASP1 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 9.425e-39
Identity = 86/184 (46.74%), Postives = 113/184 (61.41%), Query Frame = 1
Query:  139 LMDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 690
            L    S +  +  AP+DPILGVT A+  D SP K+N+GVGAYR + GKP+VL  VR+AE+ L    S   EYLP+ G      L+ KL  G +S  IKD R+  VQ LSGTG+ R+ A+F  R      IYIP PTW NH  ++  A +  KTY YY P T+GL+F  L++D++ AP G+  LL
Sbjct:   26 LRSMSSWWKSVEPAPKDPILGVTEAFLADPSPEKVNVGVGAYRDDNGKPVVLECVREAEKRLAG--STFMEYLPMGGSAKMVDLTLKLAYGDNSEFIKDKRIAAVQTLSGTGACRLFADFQKRFSPGSQIYIPVPTWSNHHNIWKDAQVPQKTYHYYHPETKGLDFSALMDDVKNAPEGSFFLL 207          

HSP 2 Score: 22.7126 bits (47), Expect = 9.425e-39
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 3
Query:  675 SYSSSHACAHNP 710
            S+   HACAHNP
Sbjct:  203 SFFLLHACAHNP 214          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: AATC_CAEEL (Probable aspartate aminotransferase, cytoplasmic OS=Caenorhabditis elegans GN=T01C8.5 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.729e-38
Identity = 83/180 (46.11%), Postives = 114/180 (63.33%), Query Frame = 1
Query:  154 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 690
            S F  I  AP   +      Y  +T+PVK+NL +GAYRTEEG+P VL VV + E  + ND S   EYLP++G   F K + +L+LGA+SPAIK+ R   VQCLSGTG+LR GAEFLA   +  T+Y+  PTWGNH  VF  AG  +V  Y ++D   + ++ +  L DL +AP  ++++L
Sbjct:    2 SFFDGIPVAPPIEVFHKNKMYLDETAPVKVNLTIGAYRTEEGQPWVLPVVHETEVEIANDTSLNHEYLPVLGHEGFRKAATELVLGAESPAIKEERSFGVQCLSGTGALRAGAEFLASVCNMKTVYVSNPTWGNHKLVFKKAGFTTVADYTFWDYDNKRVHIEKFLSDLESAPEKSVIIL 181          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: AAT_PSEAE (Aspartate aminotransferase OS=Pseudomonas aeruginosa GN=aspC PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 8.460e-37
Identity = 79/179 (44.13%), Postives = 112/179 (62.57%), Query Frame = 1
Query:  154 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 690
            S+F  +  AP DPILG+  A+N DT P K+NLGVG Y  EEG+  +L  V+ AE+  +   +  + YLPI G+  +++   KL+ G +S  +   RV T Q + GTG+L++GA+FL R     T+ I  P+W NH  +F  AG  V+ YRYYD A+ G+N  GLLEDL A P+ +IV+L
Sbjct:    2 SLFSAVEMAPRDPILGLNEAFNADTRPGKINLGVGVYYNEEGRIPLLRAVQAAEKARIEAHAP-RGYLPIEGIAAYDQGVQKLLFGNESELLAAGRVVTTQAVGGTGALKLGADFLKRLLPDATVAISDPSWENHRALFEAAGFPVQNYRYYDAASNGVNRAGLLEDLNALPARSIVVL 179          

HSP 2 Score: 21.557 bits (44), Expect = 8.460e-37
Identity = 8/13 (61.54%), Postives = 8/13 (61.54%), Query Frame = 3
Query:  672 RSYSSSHACAHNP 710
            RS    HAC HNP
Sbjct:  174 RSIVVLHACCHNP 186          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: AAT_HAEIN (Aspartate aminotransferase OS=Haemophilus influenzae GN=aspC PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.567e-36
Identity = 74/178 (41.57%), Postives = 111/178 (62.36%), Query Frame = 1
Query:  157 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 690
            +F  I  AP DPILG+  A+  +T   K+NLG+G Y+  +G   +++ V++AE+ L  D+ + K YL I G+ D+N+ +  L+ G DS  I+ NR  TVQ L GTG+LR+ AEF+ R      ++I  PTW NH  +F   G++++ YRYYD   + L+++ LLEDL  A  G +VLL
Sbjct:    1 MFEHIKAAPADPILGLGEAFKSETRENKINLGIGVYKDAQGTTPIMHAVKEAEKRLF-DKEKTKNYLTIDGIADYNEQTKALLFGKDSEVIQSNRARTVQSLGGTGALRIAAEFIKRQTKAQNVWISTPTWPNHNAIFNAVGMTIREYRYYDAERKALDWEHLLEDLSQASEGDVVLL 177          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: AATC_YEAST (Aspartate aminotransferase, cytoplasmic OS=Saccharomyces cerevisiae GN=AAT2 PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.283e-34
Identity = 72/181 (39.78%), Postives = 107/181 (59.12%), Query Frame = 1
Query:  148 SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 690
            S ++F  I   P D + G+   Y +D    K++LG+GAYR + GKP VL  V+ AE+L+ ND S   EYL I GL      +AK+I G  S A +++RV +VQ LSGTG+L + A+F ++ +    +Y+ +PTW NH  +F   GL   TY Y+   T+ L+  G L  ++ AP G+I +L
Sbjct:    2 SATLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDAFQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVL 182          

HSP 2 Score: 21.1718 bits (43), Expect = 1.283e-34
Identity = 6/7 (85.71%), Postives = 7/7 (100.00%), Query Frame = 3
Query:  690 HACAHNP 710
            H+CAHNP
Sbjct:  183 HSCAHNP 189          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: AAT_ECOLI (Aspartate aminotransferase OS=Escherichia coli (strain K12) GN=aspC PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.267e-34
Identity = 74/177 (41.81%), Postives = 104/177 (58.76%), Query Frame = 1
Query:  157 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVL 687
            +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ +++  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++     +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL
Sbjct:    1 MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVL 176          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: AAT_SALTI (Aspartate aminotransferase OS=Salmonella typhi GN=aspC PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.621e-33
Identity = 73/177 (41.24%), Postives = 104/177 (58.76%), Query Frame = 1
Query:  157 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVL 687
            +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ +++  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LR+ A+FLA++     +++  P+W NH  VF  AGL V+ Y YYD     L+F+ L   L  A +G +VL
Sbjct:    1 MFENITAAPADPILGLADLFRADDRPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET-TKNYLGIDGIPEFARCTQELLFGKGSALINDKRARTAQTPGGTGALRIAADFLAKNTPVKRVWVSNPSWPNHKSVFNAAGLEVREYAYYDAENHSLDFEALQASLSEAQAGDVVL 176          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: AAT_SALTY (Aspartate aminotransferase OS=Salmonella typhimurium GN=aspC PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.766e-33
Identity = 73/177 (41.24%), Postives = 104/177 (58.76%), Query Frame = 1
Query:  157 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVL 687
            +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ +++  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LR+ A+FLA++     +++  P+W NH  VF  AGL V+ Y YYD     L+F+ L   L  A +G +VL
Sbjct:    1 MFENITAAPADPILGLADLFRADDRPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET-TKNYLGIDGIPEFARCTQELLFGKGSALINDKRARTAQTPGGTGALRIAADFLAKNTPVKRVWVSNPSWPNHKSVFNAAGLEVREYAYYDAENHTLDFEALQASLSEAQAGDVVL 176          
BLAST of FC932640 vs. ExPASy Swiss-Prot
Match: TYRB_ECOLI (Aromatic-amino-acid aminotransferase OS=Escherichia coli (strain K12) GN=tyrB PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.191e-30
Identity = 70/178 (39.33%), Postives = 100/178 (56.18%), Query Frame = 1
Query:  157 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 690
            +F K+     DPIL +   + +D    K+NL +G Y  E+G    L  V +AE  L         YLP+ GL  +    A L+ GAD P +K  RV T+Q L G+G+L+VGA+FL R++ +  +++  PTW NH  +F  AG  V TY +YD AT G+ F  LL  L+  P+ +IVLL
Sbjct:    1 MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLL 178          
The following BLAST results are available for this feature:
BLAST of FC932640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
AATC_DICDI2.583e-3946.67Aspartate aminotransferase, cytoplasmic OS=Dictyos... [more]
AAT1_ARATH9.425e-3946.74Aspartate aminotransferase, mitochondrial OS=Arabi... [more]
AATC_CAEEL3.729e-3846.11Probable aspartate aminotransferase, cytoplasmic O... [more]
AAT_PSEAE8.460e-3744.13Aspartate aminotransferase OS=Pseudomonas aerugino... [more]
AAT_HAEIN1.567e-3641.57Aspartate aminotransferase OS=Haemophilus influenz... [more]
AATC_YEAST1.283e-3439.78Aspartate aminotransferase, cytoplasmic OS=Sacchar... [more]
AAT_ECOLI4.267e-3441.81Aspartate aminotransferase OS=Escherichia coli (st... [more]
AAT_SALTI1.621e-3341.24Aspartate aminotransferase OS=Salmonella typhi GN=... [more]
AAT_SALTY2.766e-3341.24Aspartate aminotransferase OS=Salmonella typhimuri... [more]
TYRB_ECOLI2.191e-3039.33Aromatic-amino-acid aminotransferase OS=Escherichi... [more]

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Properties
Property NameValue
Genbank descriptionC34210G08EF PostHarveN Citrus clementina cDNA clone C34210G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932640 ID=FC932640; Name=FC932640; organism=Citrus clementina; type=EST; length=710bp
GGCGCCCATTGTAACCGCCTACAGTTAAACTAACCAAACCACTCCGAGGC
CAATACTATATTAAACCCAAACATAATTTTCTCTTCACATTTTTTTCCCC
CACAAACTCTCTCATTTCATTGATTTCTTGAAAGAAATTTAATGGATTCT
GAATCAGTGTTTGGAAAGATTGTTCGTGCTCCTGAAGATCCCATTCTAGG
GGTCACTGTTGCTTATAACAAGGATACAAGCCCAGTCAAGTTGAACTTGG
GTGTTGGTGCTTACCGAACTGAGGAAGGGAAACCTCTGGTTCTGAATGTA
GTGAGAAAGGCAGAGCAGCTCTTAGTGAATGACCAGTCACGGGTCAAAGA
GTATCTTCCCATTGTTGGACTTGTGGATTTTAATAAATTGAGTGCAAAGC
TCATCCTTGGTGCTGACAGCCCTGCGATTAAAGACAACAGAGTGACCACC
GTTCAGTGCTTGTCTGGCACTGGTTCTTTGAGGGTTGGAGCTGAGTTTCT
GGCAAGGCATTATCACCAACTTACCATATATATTCCACAGCCAACATGGG
GAAACCATCCCAAAGTTTTCACTTTAGCAGGATTGTCTGTGAAGACCTAC
CGCTATTATGATCCAGCAACACGTGGGCTAAACTTCCAAGGCTTGCTGGA
GGATCTTAGGGCTGCACCATCCGGAGCTATAGTTCTTCTCATGCATGTGC
TCATAATCCA
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