FC932646

Overview
NameFC932646
Unique NameFC932646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: CHLI_GUITH (Magnesium-chelatase subunit chlI OS=Guillardia theta GN=chlI PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.977e-44
Identity = 87/133 (65.41%), Postives = 105/133 (78.95%), Query Frame = 1
Query:  319 SKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEK-L*RRCQAFEPG 714
            +K  +RPV+PFTAIVGQEEMKL L LNVIDPKIGGV+IMGDRGTGKSTT+R++ D+LP I +V  DP+NS P+D + M  EVR  + KGE +     K++M+DLPLGATEDRVCGTIDIEK L    +AFEPG
Sbjct:    6 TKTKERPVFPFTAIVGQEEMKLALTLNVIDPKIGGVIIMGDRGTGKSTTIRAITDILPEIPIVENDPFNSHPQDFDLMSDEVRSRIEKGESIPSVMKKVSMIDLPLGATEDRVCGTIDIEKALTEGVKAFEPG 138          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: CHLI_EUGGR (Magnesium-chelatase subunit chlI OS=Euglena gracilis GN=chlI PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.977e-44
Identity = 92/132 (69.70%), Postives = 105/132 (79.55%), Query Frame = 1
Query:  322 KESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEK-L*RRCQAFEPG 714
            K ++RPV+PFT+IVGQEEMKL L+LNVIDPKIGGVMIMGDRGTGKST VR+LVDLLP I V+  DPYNSDP D E M  +V E + K E++SI   K  MVDLPLG TEDRVCGTIDIEK +    +AFEPG
Sbjct:    4 KTNERPVFPFTSIVGQEEMKLSLILNVIDPKIGGVMIMGDRGTGKSTIVRALVDLLPPIDVIENDPYNSDPYDTELMSDDVLEKIKKNEKVSIIQVKTPMVDLPLGGTEDRVCGTIDIEKAISEGKKAFEPG 135          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: CHLI_ODOSI (Magnesium-chelatase subunit chlI OS=Odontella sinensis GN=chlI PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.377e-42
Identity = 89/132 (67.42%), Postives = 102/132 (77.27%), Query Frame = 1
Query:  322 KESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEK-L*RRCQAFEPG 714
            K+   PV+PFTAIVGQEEMKL L LNVIDPKIGGVMIMGDRGTGKSTT+R++ DLLP I+VV  DP+NS   D + MG E++ ++  GE L     KI MVDLPLGATEDRVCGTIDIEK L    +AFEPG
Sbjct:    7 KKFSTPVFPFTAIVGQEEMKLALQLNVIDPKIGGVMIMGDRGTGKSTTIRAIADLLPEIEVVKDDPFNSHKSDLDLMGNEIKLAIQNGESLETELIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPG 138          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: CHLI_PORPU (Magnesium-chelatase subunit chlI OS=Porphyra purpurea GN=chlI PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.663e-41
Identity = 86/135 (63.70%), Postives = 104/135 (77.04%), Query Frame = 1
Query:  313 KRSKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEK-L*RRCQAFEPG 714
            K +KE+ RPV+PFTAIVGQEEMKL L+LNVIDPKIGGVMIMGDRGTGKSTT+R++ DLLP I++V  D +NS P D + M  E + ++  G  +   + K+ MVDLPLGATEDRVCGTIDIEK L    + FEPG
Sbjct:    6 KENKETVRPVFPFTAIVGQEEMKLALMLNVIDPKIGGVMIMGDRGTGKSTTIRAIADLLPKIEIVKDDLFNSHPSDVDLMSDENKHALQNGINIDKAYIKVPMVDLPLGATEDRVCGTIDIEKALTEGVKTFEPG 140          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: CHLI_PORYE (Magnesium-chelatase subunit chlI OS=Porphyra yezoensis GN=chlI PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.172e-41
Identity = 87/135 (64.44%), Postives = 106/135 (78.52%), Query Frame = 1
Query:  313 KRSKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEK-L*RRCQAFEPG 714
            K +KE+ RPV+PFTAIVGQEEMKL L+LNVIDPKIGGVMIMGDRGTGKSTT+R++ DLLP I+VV  D +NS P D + M  E ++++  G  L+ ++  + MVDLPLGATEDRVCGTIDIEK L    + FEPG
Sbjct:    6 KENKETIRPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRAIADLLPKIEVVKDDLFNSHPMDVDLMSDENKKTLQDGVALTTSYINVPMVDLPLGATEDRVCGTIDIEKALTEGIKTFEPG 140          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: CHLI_BIGNA (Magnesium-chelatase subunit chlI OS=Bigelowiella natans GN=chlI PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.127e-40
Identity = 87/128 (67.97%), Postives = 99/128 (77.34%), Query Frame = 1
Query:  334 RPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEK-L*RRCQAFEPG 714
            R  +PFTA++GQ  MKL L+LNVIDPKIGGVM MGDRGTGKST VRSLVDLLP I+VV  DP+NSDP D + M  EV+E+   GE++  T  K  MVDLPLGATEDRVCGTIDIEK L    +AFEPG
Sbjct:   20 RQAFPFTALIGQTNMKLALILNVIDPKIGGVMSMGDRGTGKSTIVRSLVDLLPNIQVVSEDPFNSDPIDYDLMSQEVKEAKKSGEKIYTTSIKTPMVDLPLGATEDRVCGTIDIEKALIDGTKAFEPG 147          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: CHLI_CYACA (Magnesium-chelatase subunit chlI OS=Cyanidium caldarium GN=chlI PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.655e-39
Identity = 82/126 (65.08%), Postives = 100/126 (79.37%), Query Frame = 1
Query:  340 VYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEK-L*RRCQAFEPG 714
            V+PFTAIVGQEEMK+ LLLNV+DPKIGGVMIMGDRGTGK+TT+R+LVD+LP I VV  DPYNS P D + M  EV+  V+    +   ++K+ +VDLPLGATEDRVCG+IDIEK L    ++FEPG
Sbjct:   17 VFPFTAIVGQEEMKISLLLNVVDPKIGGVMIMGDRGTGKTTTIRALVDILPDILVVKDDPYNSHPHDVDLMSSEVQALVLNRMNIETCYTKVPLVDLPLGATEDRVCGSIDIEKALSEGKKSFEPG 142          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: CHLI_OLILU (Magnesium-chelatase subunit chlI OS=Olisthodiscus luteus GN=chlI PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.572e-34
Identity = 80/132 (60.61%), Postives = 96/132 (72.73%), Query Frame = 1
Query:  322 KESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEK-L*RRCQAFEPG 714
            K+   P++PFTAIVGQEEMKL L LNVIDPKIGGVMIMGDRGTGKSTT+R++ DLLP I+VV  + +N+ P +      ++ E +VK         K  M+DLPLGATEDRVCGTIDIEK L    +AFEPG
Sbjct:    5 KKINPPIFPFTAIVGQEEMKLALQLNVIDPKIGGVMIMGDRGTGKSTTIRAIADLLPEIEVVKDNQFNTAPSE------DLNEEIVK--------IKTPMIDLPLGATEDRVCGTIDIEKALTDGVKAFEPG 122          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: CHLI_ANAVA (Magnesium-chelatase subunit chlI (Fragment) OS=Anabaena variabilis GN=chlI PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.387e-34
Identity = 73/104 (70.19%), Postives = 81/104 (77.88%), Query Frame = 1
Query:  406 DPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEK-L*RRCQAFEPG 714
            DPKIGGVMIMGDRGTGKSTT+R+L DLLP I VV  DP+NSDP DP+ M  EVR+    G E+ I F K+ MVDLPLGATEDRVCGTIDIEK L    +AFEPG
Sbjct:    1 DPKIGGVMIMGDRGTGKSTTIRALADLLPEIPVVANDPFNSDPSDPDLMSDEVRQKSGTGAEIPIEFKKVQMVDLPLGATEDRVCGTIDIEKALSEGVKAFEPG 104          
BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: BCHI_CHLTE (Magnesium-chelatase 38 kDa subunit OS=Chlorobium tepidum GN=bchI PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.844e-33
Identity = 84/162 (51.85%), Postives = 106/162 (65.43%), Query Frame = 1
Query:  244 KMGRALFAVTNVATEVNSVEQAQK-RSKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPE---DPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEK-L*RRCQAFEPG 714
            K   A  A   V  E  +V + +K  +K+     +PFTAIVGQEEMKL L+LN+IDP+IGGV++MG RGTGKSTTVR+L ++LP+I  V GD YN   E   + EA G       +K E++      + +VDLPLGATEDRVCGTIDIEK L    +AFEPG
Sbjct:   15 KASAAKEAKVKVTAEEKAVTEVKKPAAKKKSALAFPFTAIVGQEEMKLSLILNIIDPRIGGVLVMGHRGTGKSTTVRALAEVLPLIPRVKGDIYNRTVEQYIEMEAAG--KGAPAIKPEDVETELIPVPVVDLPLGATEDRVCGTIDIEKALTSGVKAFEPG 174          
The following BLAST results are available for this feature:
BLAST of FC932646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CHLI_GUITH7.977e-4465.41Magnesium-chelatase subunit chlI OS=Guillardia the... [more]
CHLI_EUGGR7.977e-4469.70Magnesium-chelatase subunit chlI OS=Euglena gracil... [more]
CHLI_ODOSI4.377e-4267.42Magnesium-chelatase subunit chlI OS=Odontella sine... [more]
CHLI_PORPU1.663e-4163.70Magnesium-chelatase subunit chlI OS=Porphyra purpu... [more]
CHLI_PORYE2.172e-4164.44Magnesium-chelatase subunit chlI OS=Porphyra yezoe... [more]
CHLI_BIGNA9.127e-4067.97Magnesium-chelatase subunit chlI OS=Bigelowiella n... [more]
CHLI_CYACA2.655e-3965.08Magnesium-chelatase subunit chlI OS=Cyanidium cald... [more]
CHLI_OLILU2.572e-3460.61Magnesium-chelatase subunit chlI OS=Olisthodiscus ... [more]
CHLI_ANAVA4.387e-3470.19Magnesium-chelatase subunit chlI (Fragment) OS=Ana... [more]
BCHI_CHLTE2.844e-3351.85Magnesium-chelatase 38 kDa subunit OS=Chlorobium t... [more]

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Properties
Property NameValue
Genbank descriptionC34210H02EF PostHarveN Citrus clementina cDNA clone C34210H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932646 ID=FC932646; Name=FC932646; organism=Citrus clementina; type=EST; length=725bp
GATGTAATCTGTGATGGTCAACAAAACCAGTGAACACAAACTCTCTCACC
CTAGTAACAGTAACACCTACATTTGCGCACGGGCATGGCGTCCGTGTTAG
GAACTCGTTCTTCCTCTGCAATCTTGGCTTCTCGCCCTCTCTCTTTTCCA
GCATCAAACTCAAAGTCTGCCATCTCCTCTCTCTCCTTAAACCCCGGGCA
GAATTATGGAAGGAGGTTTTATGGGGGGATTGGGATTGAAGAAAAGATGG
GGCGGGCTCTGTTTGCAGTTACCAATGTTGCCACTGAGGTTAACTCTGTT
GAGCAGGCCCAGAAGAGATCCAAGGAAAGCCAGAGGCCGGTGTATCCATT
TACTGCAATAGTGGGACAGGAAGAGATGAAATTGTGCCTTTTGTTAAATG
TGATTGATCCCAAAATTGGGGGTGTTATGATTATGGGTGATAGAGGAACG
GGGAAATCCACCACTGTCAGGTCCTTGGTAGATTTACTCCCCGTAATCAA
GGTAGTTGTCGGTGACCCATATAACTCAGATCCAGAAGATCCAGAGGCCA
TGGGTATTGAAGTCAGAGAGTCTGTCGTGAAAGGGGAGGAGCTCTCCATT
ACATTCAGTAAAATCAACATGGTTGATTTGCCATTGGGTGCTACAGAAGA
CAGGGTCTGTGGGACGATTGACATTGAGAAGCTCTAACGGAGGTGTCAAG
CATTTGAGCCTGGCTTCTGCTAAGC
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