FC932646

Overview
NameFC932646
Unique NameFC932646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC932646 vs. ExPASy Swiss-Prot
Match: CHLD_SYNE7 (Magnesium-chelatase subunit chlD OS=Synechococcus elongatus (strain PCC 7942) GN=chlD PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 9.190e-16
Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 1 
Query:  343 YPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKL*RRCQ-AFEPG 714
            +P  A+VGQ  +KL L+L  +DP +GGV I G RGT KS   R+L  LLP I+ ++ + +N+DP          ++    GEEL           +PLG TEDR+ G++D+ +  +R +  F+PG
Sbjct:   11 FPLPAVVGQGPIKLALILAAVDPGLGGVAIAGRRGTAKSVMARALHALLPPIE-ILENSFNADPNRAGDWDALTQQRQANGEELPTRVIPAPFCQVPLGITEDRLLGSVDVAQSIKRGETVFQPG 134
The following BLAST results are available for this feature:
BLAST of FC932646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CHLD_SYNE79.190e-1637.60Magnesium-chelatase subunit chlD OS=Synechococcus ... [more]

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Properties
Property NameValue
Genbank descriptionC34210H02EF PostHarveN Citrus clementina cDNA clone C34210H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932646 ID=FC932646; Name=FC932646; organism=Citrus clementina; type=EST; length=725bp
GATGTAATCTGTGATGGTCAACAAAACCAGTGAACACAAACTCTCTCACC
CTAGTAACAGTAACACCTACATTTGCGCACGGGCATGGCGTCCGTGTTAG
GAACTCGTTCTTCCTCTGCAATCTTGGCTTCTCGCCCTCTCTCTTTTCCA
GCATCAAACTCAAAGTCTGCCATCTCCTCTCTCTCCTTAAACCCCGGGCA
GAATTATGGAAGGAGGTTTTATGGGGGGATTGGGATTGAAGAAAAGATGG
GGCGGGCTCTGTTTGCAGTTACCAATGTTGCCACTGAGGTTAACTCTGTT
GAGCAGGCCCAGAAGAGATCCAAGGAAAGCCAGAGGCCGGTGTATCCATT
TACTGCAATAGTGGGACAGGAAGAGATGAAATTGTGCCTTTTGTTAAATG
TGATTGATCCCAAAATTGGGGGTGTTATGATTATGGGTGATAGAGGAACG
GGGAAATCCACCACTGTCAGGTCCTTGGTAGATTTACTCCCCGTAATCAA
GGTAGTTGTCGGTGACCCATATAACTCAGATCCAGAAGATCCAGAGGCCA
TGGGTATTGAAGTCAGAGAGTCTGTCGTGAAAGGGGAGGAGCTCTCCATT
ACATTCAGTAAAATCAACATGGTTGATTTGCCATTGGGTGCTACAGAAGA
CAGGGTCTGTGGGACGATTGACATTGAGAAGCTCTAACGGAGGTGTCAAG
CATTTGAGCCTGGCTTCTGCTAAGC
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