GH733255

Overview
NameGH733255
Unique NameGH733255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length330
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15266 contig Ccv1_Contig15266:697..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GH733255 vs. ExPASy Swiss-Prot
Match: TCMO_ZINEL (Trans-cinnamate 4-monooxygenase OS=Zinnia elegans GN=CYP73A12 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.339e-34
Identity = 70/89 (78.65%), Postives = 72/89 (80.90%), Query Frame = -2
Query:   54 QFRPERFLEEESKVEANGNDFRYLPVGVGRRSCPXXXXXXXXXXXXXGRLVQNFELLPPPGQSKIDTAEKGGQFXLHILKHSTIVAKPR 320
            +FRPERFLEEESKVEANGNDFRYLP GVGRRSCP             GRLVQNFELLPPPGQ K+DT EKGGQF LHILKHSTIVAKPR
Sbjct:  415 EFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFELLPPPGQDKVDTTEKGGQFSLHILKHSTIVAKPR 503          
BLAST of GH733255 vs. ExPASy Swiss-Prot
Match: TCMO_PETCR (Trans-cinnamate 4-monooxygenase OS=Petroselinum crispum GN=CYP73A10 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.845e-33
Identity = 70/90 (77.78%), Postives = 73/90 (81.11%), Query Frame = -2
Query:   51 QFRPERFLEEESKVEANGNDFRYLPVGVGRRSCPXXXXXXXXXXXXXGRLVQNFELLPPPGQSKIDTAEKGGQFXLHILKHSTIVAKPRS 320
            +FRPERFLEEESKVEANGNDF+Y+P GVGRRSCP             GRLVQNFELLPPPGQSKIDTAEKGGQF L ILKHSTIV KPRS
Sbjct:  416 EFRPERFLEEESKVEANGNDFKYIPFGVGRRSCPGIILALPILGIVIGRLVQNFELLPPPGQSKIDTAEKGGQFSLQILKHSTIVCKPRS 505          
BLAST of GH733255 vs. ExPASy Swiss-Prot
Match: TCMO_RUTGR (Trans-cinnamate 4-monooxygenase OS=Ruta graveolens GN=CYP73A2 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.255e-31
Identity = 67/89 (75.28%), Postives = 70/89 (78.65%), Query Frame = -2
Query:   51 FRPERFLEEESKVEANGNDFRYLPVGVGRRSCPXXXXXXXXXXXXXGRLVQNFELLPPPGQSKIDTAEKGGQFXLHILKHSTIVAKPRS 317
            FRPERFLEEES VEANGNDFRY+P GVGRRSCP             GR+VQNFELLPPPGQSKIDT+EKGGQF L IL HSTIV KPRS
Sbjct:  416 FRPERFLEEESGVEANGNDFRYIPFGVGRRSCPGIILALPILGITIGRMVQNFELLPPPGQSKIDTSEKGGQFSLFILNHSTIVLKPRS 504          
BLAST of GH733255 vs. ExPASy Swiss-Prot
Match: TCMO_ARATH (Trans-cinnamate 4-monooxygenase OS=Arabidopsis thaliana GN=CYP73A5 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.023e-31
Identity = 64/90 (71.11%), Postives = 70/90 (77.78%), Query Frame = -2
Query:   51 QFRPERFLEEESKVEANGNDFRYLPVGVGRRSCPXXXXXXXXXXXXXGRLVQNFELLPPPGQSKIDTAEKGGQFXLHILKHSTIVAKPRS 320
            +FRPERF EEES VEANGNDFRY+P GVGRRSCP             GR+VQNFELLPPPGQSK+DT+EKGGQF LHIL HS IV KPR+
Sbjct:  415 EFRPERFFEEESHVEANGNDFRYVPFGVGRRSCPGIILALPILGITIGRMVQNFELLPPPGQSKVDTSEKGGQFSLHILNHSIIVMKPRN 504          
The following BLAST results are available for this feature:
BLAST of GH733255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
TCMO_ZINEL6.339e-3478.65Trans-cinnamate 4-monooxygenase OS=Zinnia elegans ... [more]
TCMO_PETCR1.845e-3377.78Trans-cinnamate 4-monooxygenase OS=Petroselinum cr... [more]
TCMO_RUTGR2.255e-3175.28Trans-cinnamate 4-monooxygenase OS=Ruta graveolens... [more]
TCMO_ARATH5.023e-3171.11Trans-cinnamate 4-monooxygenase OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionU_40 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733255 ID=GH733255; Name=GH733255; organism=Citrus clementina; type=EST; length=330bp
GTGATGAGTCCTGAGTAACGTTACAACCAAATGGAATTGTGAAACTAGAA
TGATCTAGGCTTGGCAACAATGGTCGAGTGCTTCAAAATRTGCAAACKGA
ACTGCCCACCTTTCTCTGCAGTGTCAATCTTAGATTGACCTGGAGGAGGC
AAGAGCTCAAAGTTCTGTACCAAACGCCCAATAGTGATACCAAGAATTGG
CAAAGCAAGGATAATTCCAGGGCAGCTTCTTCTCCCAACACCGACAGGAA
GGTAACGGAAGTCATTTCCATTAGCCTCAACCTTGGACTCCTCCTCCAAA
AACCTCTCAGGCCTGAATTGGTACGCAGTC
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