GH733268 | Citrus Genome Database

Overview


Name	GH733268
Unique Name	GH733268
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	252

Libraries


Library Name	Type
Citrus clementina pistils cDNA-AFLP library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: GRP78_PONAB (78 kDa glucose-regulated protein OS=Pongo abelii GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 9.731e-11
Identity = 28/69 (40.58%), Postives = 49/69 (71.01%), Query Frame = 3

Query:   42 LETYIYNMRSTINDK--LADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y Y++++ I DK  L  K+ S+DKE +E  ++E +EWL+ +Q+A+ +DF  K KE+E +  P+I++
Sbjct:  565 LESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISK 633

HSP 2 Score: 20.7866 bits (42), Expect = 9.731e-11
Identity = 6/12 (50.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:    4 EKEVRERVDSRN 39
            +K+++ER+D+RN
Sbjct:  552 DKKLKERIDTRN 563

BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: GRP78_MOUSE (78 kDa glucose-regulated protein OS=Mus musculus GN=Hspa5 PE=1 SV=3)

HSP 1 Score: 64.6994 bits (156), Expect = 9.731e-11
Identity = 28/69 (40.58%), Postives = 49/69 (71.01%), Query Frame = 3

Query:   42 LETYIYNMRSTINDK--LADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y Y++++ I DK  L  K+ S+DKE +E  ++E +EWL+ +Q+A+ +DF  K KE+E +  P+I++
Sbjct:  566 LESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISK 634

HSP 2 Score: 20.7866 bits (42), Expect = 9.731e-11
Identity = 6/12 (50.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:    4 EKEVRERVDSRN 39
            +K+++ER+D+RN
Sbjct:  553 DKKLKERIDTRN 564

BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: GRP78_MESAU (78 kDa glucose-regulated protein OS=Mesocricetus auratus GN=HSPA5 PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 9.731e-11
Identity = 28/69 (40.58%), Postives = 49/69 (71.01%), Query Frame = 3

Query:   42 LETYIYNMRSTINDK--LADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y Y++++ I DK  L  K+ S+DKE +E  ++E +EWL+ +Q+A+ +DF  K KE+E +  P+I++
Sbjct:  565 LESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISK 633

HSP 2 Score: 20.7866 bits (42), Expect = 9.731e-11
Identity = 6/12 (50.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:    4 EKEVRERVDSRN 39
            +K+++ER+D+RN
Sbjct:  552 DKKLKERIDTRN 563

BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: GRP78_HUMAN (78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2)

HSP 1 Score: 64.6994 bits (156), Expect = 9.731e-11
Identity = 28/69 (40.58%), Postives = 49/69 (71.01%), Query Frame = 3

Query:   42 LETYIYNMRSTINDK--LADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y Y++++ I DK  L  K+ S+DKE +E  ++E +EWL+ +Q+A+ +DF  K KE+E +  P+I++
Sbjct:  565 LESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISK 633

HSP 2 Score: 20.7866 bits (42), Expect = 9.731e-11
Identity = 6/12 (50.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:    4 EKEVRERVDSRN 39
            +K+++ER+D+RN
Sbjct:  552 DKKLKERIDTRN 563

BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: GRP78_BOVIN (78 kDa glucose-regulated protein OS=Bos taurus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 9.731e-11
Identity = 28/69 (40.58%), Postives = 49/69 (71.01%), Query Frame = 3

Query:   42 LETYIYNMRSTINDK--LADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y Y++++ I DK  L  K+ S+DKE +E  ++E +EWL+ +Q+A+ +DF  K KE+E +  P+I++
Sbjct:  566 LESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISK 634

HSP 2 Score: 20.7866 bits (42), Expect = 9.731e-11
Identity = 6/12 (50.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:    4 EKEVRERVDSRN 39
            +K+++ER+D+RN
Sbjct:  553 DKKLKERIDTRN 564

The following BLAST results are available for this feature:

BLAST of GH733268 vs. ExPASy Swiss-Prot

BLAST of GH733268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105


Match Name	E-value	Identity	Description
GRP78_PONAB	9.731e-11	40.58	78 kDa glucose-regulated protein OS=Pongo abelii G...	[more]
GRP78_MOUSE	9.731e-11	40.58	78 kDa glucose-regulated protein OS=Mus musculus G...	[more]
GRP78_MESAU	9.731e-11	40.58	78 kDa glucose-regulated protein OS=Mesocricetus a...	[more]
GRP78_HUMAN	9.731e-11	40.58	78 kDa glucose-regulated protein OS=Homo sapiens G...	[more]
GRP78_BOVIN	9.731e-11	40.58	78 kDa glucose-regulated protein OS=Bos taurus GN=...	[more]

Pages

Properties


Property Name	Value
Genbank description	U_56 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GH733268 ID=GH733268; Name=GH733268; organism=Citrus clementina; type=EST; length=252bp
GNGGAGAAAGAGGTGAGGGAGAGGGTTGATTCCAGGAACAGTTAGAAACT
TACATCTACAACATGAGGAGCACCATCAATGACAAGCTTGCGGACAAGAT
TGATTCTGATGATAAGGAGAGGATTGAGAGCACACTGAAGGAAGCTCTCG
AATGGTTGGATGATAATCAGAACGCAGAGAAGGATGATTTTGACGAGAAG
ATGAAGGAGGTGGAAGCTGTATGCAACCCTGTGATTACTCAGGACTCATC
AN