GH733268

Overview
NameGH733268
Unique NameGH733268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length252
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP70_MAIZE (Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.703e-15
Identity = 35/68 (51.47%), Postives = 53/68 (77.94%), Query Frame = 3
Query:   42 LETYIYNMRSTI-NDKLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE Y YNMR+TI +DK+A K+ ++DK++IE  +  A+ WLD NQ AE ++F++KMKE+E +CNP+I +
Sbjct:  544 LENYAYNMRNTIKDDKIASKLPAEDKKKIEDAVDGAISWLDSNQLAEVEEFEDKMKELEGICNPIIAK 611          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP70_SOYBN (Heat shock 70 kDa protein OS=Glycine max GN=HSP70 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.795e-15
Identity = 33/68 (48.53%), Postives = 52/68 (76.47%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE Y YNMR+TI D K+  K+  D+K++IE  +++A++WL+ NQ AE D+F++K KE+E +CNP+I +
Sbjct:  547 LENYAYNMRNTIKDEKIGGKLSPDEKQKIEKAVEDAIQWLEGNQMAEVDEFEDKQKELEGICNPIIAK 614          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP7E_SPIOL (Chloroplast envelope membrane 70 kDa heat shock-related protein OS=Spinacia oleracea GN=SCE70 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 33/68 (48.53%), Postives = 50/68 (73.53%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE Y YNMR+ + D K+  K+   DK++IE  +  +++WLD NQ AE D+FD+KMKE+E++CNP+I +
Sbjct:  548 LENYAYNMRNIVKDEKIGAKLSEADKKKIEEAIDASIQWLDGNQLAEADEFDDKMKELESICNPIIAK 615          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP7C_ORYLA (Heat shock cognate 71 kDa protein OS=Oryzias latipes GN=hsc70 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.195e-14
Identity = 34/68 (50.00%), Postives = 49/68 (72.06%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y +NM+ST+ D KLA KI  +DK++I     E + WLD NQ AE+D++  + KE+E VCNP+IT+
Sbjct:  540 LESYAFNMKSTVEDEKLAGKISDEDKQKILDKCNEVISWLDKNQTAERDEYVHQQKELEKVCNPIITK 607          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP7C_SAGOE (Heat shock cognate 71 kDa protein OS=Saguinus oedipus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.479e-14
Identity = 33/68 (48.53%), Postives = 50/68 (73.53%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y +NM++T+ D KL  KI+ +DK++I     E + WLD NQ AEK++F+ + KE+E VCNP+IT+
Sbjct:  542 LESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITK 609          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP7C_RAT (Heat shock cognate 71 kDa protein OS=Rattus norvegicus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.479e-14
Identity = 33/68 (48.53%), Postives = 50/68 (73.53%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y +NM++T+ D KL  KI+ +DK++I     E + WLD NQ AEK++F+ + KE+E VCNP+IT+
Sbjct:  542 LESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITK 609          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP7C_PONAB (Heat shock cognate 71 kDa protein OS=Pongo abelii GN=HSPA8 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.479e-14
Identity = 33/68 (48.53%), Postives = 50/68 (73.53%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y +NM++T+ D KL  KI+ +DK++I     E + WLD NQ AEK++F+ + KE+E VCNP+IT+
Sbjct:  542 LESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITK 609          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP7C_MOUSE (Heat shock cognate 71 kDa protein OS=Mus musculus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.479e-14
Identity = 33/68 (48.53%), Postives = 50/68 (73.53%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y +NM++T+ D KL  KI+ +DK++I     E + WLD NQ AEK++F+ + KE+E VCNP+IT+
Sbjct:  542 LESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITK 609          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP7C_HUMAN (Heat shock cognate 71 kDa protein OS=Homo sapiens GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.479e-14
Identity = 33/68 (48.53%), Postives = 50/68 (73.53%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y +NM++T+ D KL  KI+ +DK++I     E + WLD NQ AEK++F+ + KE+E VCNP+IT+
Sbjct:  542 LESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITK 609          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP7C_HORSE (Heat shock cognate 71 kDa protein OS=Equus caballus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.479e-14
Identity = 33/68 (48.53%), Postives = 50/68 (73.53%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y +NM++T+ D KL  KI+ +DK++I     E + WLD NQ AEK++F+ + KE+E VCNP+IT+
Sbjct:  542 LESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITK 609          
The following BLAST results are available for this feature:
BLAST of GH733268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
HSP70_MAIZE1.703e-1551.47Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=... [more]
HSP70_SOYBN3.795e-1548.53Heat shock 70 kDa protein OS=Glycine max GN=HSP70 ... [more]
HSP7E_SPIOL1.442e-1448.53Chloroplast envelope membrane 70 kDa heat shock-re... [more]
HSP7C_ORYLA4.195e-1450.00Heat shock cognate 71 kDa protein OS=Oryzias latip... [more]
HSP7C_SAGOE5.479e-1448.53Heat shock cognate 71 kDa protein OS=Saguinus oedi... [more]
HSP7C_RAT5.479e-1448.53Heat shock cognate 71 kDa protein OS=Rattus norveg... [more]
HSP7C_PONAB5.479e-1448.53Heat shock cognate 71 kDa protein OS=Pongo abelii ... [more]
HSP7C_MOUSE5.479e-1448.53Heat shock cognate 71 kDa protein OS=Mus musculus ... [more]
HSP7C_HUMAN5.479e-1448.53Heat shock cognate 71 kDa protein OS=Homo sapiens ... [more]
HSP7C_HORSE5.479e-1448.53Heat shock cognate 71 kDa protein OS=Equus caballu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionU_56 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733268 ID=GH733268; Name=GH733268; organism=Citrus clementina; type=EST; length=252bp
GNGGAGAAAGAGGTGAGGGAGAGGGTTGATTCCAGGAACAGTTAGAAACT
TACATCTACAACATGAGGAGCACCATCAATGACAAGCTTGCGGACAAGAT
TGATTCTGATGATAAGGAGAGGATTGAGAGCACACTGAAGGAAGCTCTCG
AATGGTTGGATGATAATCAGAACGCAGAGAAGGATGATTTTGACGAGAAG
ATGAAGGAGGTGGAAGCTGTATGCAACCCTGTGATTACTCAGGACTCATC
AN
back to top