GH733268

Overview
NameGH733268
Unique NameGH733268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length252
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP7C_CRIGR (Heat shock cognate 71 kDa protein OS=Cricetulus griseus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.479e-14
Identity = 33/68 (48.53%), Postives = 50/68 (73.53%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y +NM++T+ D KL  KI+ +DK++I     E + WLD NQ AEK++F+ + KE+E VCNP+IT+
Sbjct:  542 LESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITK 609          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP7C_BOVIN (Heat shock cognate 71 kDa protein OS=Bos taurus GN=HSPA8 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.479e-14
Identity = 33/68 (48.53%), Postives = 50/68 (73.53%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y +NM++T+ D KL  KI+ +DK++I     E + WLD NQ AEK++F+ + KE+E VCNP+IT+
Sbjct:  542 LESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITK 609          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP70_HYDMA (Heat shock 70 kDa protein OS=Hydra magnipapillata GN=HSP70.1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.479e-14
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y YNM+ T+ D K+  KI  +DK+ I     E +EW+D NQ AEKD ++ K KE+E VCNP+IT+
Sbjct:  549 LESYCYNMKQTVEDEKVKGKISEEDKKTIIKKCNETVEWVDKNQTAEKDQYEHKQKELEKVCNPIITK 616          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP70_BRELC (Heat shock 70 kDa protein OS=Bremia lactucae GN=HSP70 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.479e-14
Identity = 33/66 (50.00%), Postives = 49/66 (74.24%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVI 236
            LE Y YN+R+T+ND KL D+I  DDK+ IE  + E + WLD NQ+AEK++++ K KE+E + NP++
Sbjct:  545 LENYSYNLRNTLNDEKLKDQIPEDDKKAIEDKVTETINWLDANQSAEKEEYEGKQKELEGIANPIL 610          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP7C_ICTPU (Heat shock cognate 71 kDa protein OS=Ictalurus punctatus GN=hsc70 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.156e-14
Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y +NM+ST+ D KL  KI  +DK +I     E + WLD NQ AEKD+++ + K++E VCNP+IT+
Sbjct:  542 LESYAFNMKSTVEDEKLKGKISDEDKHKILDKCNEVISWLDKNQTAEKDEYEHQQKDLEKVCNPIITK 609          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP72_SCHPO (Probable heat shock protein ssa2 OS=Schizosaccharomyces pombe GN=ssa2 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.156e-14
Identity = 31/68 (45.59%), Postives = 51/68 (75.00%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y Y++R++++D  L DK+D+ DKE ++  +KE +EWLD N  A KD+F+ K KE+E+V NP++ +
Sbjct:  540 LESYAYSLRNSLDDPNLKDKVDASDKETVDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANPIMAK 607          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP70_BLAEM (Heat shock 70 kDa protein OS=Blastocladiella emersonii GN=HSP70 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.156e-14
Identity = 32/68 (47.06%), Postives = 49/68 (72.06%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y YN+R+T+ND K+A K+D+ DKE +   + E + WLD NQ   KD+++ K KE+E V NP++T+
Sbjct:  545 LESYAYNLRNTLNDDKVAGKMDAADKETLNKAIDETISWLDGNQEGAKDEYEHKQKELEGVANPIMTK 612          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HS71L_MOUSE (Heat shock 70 kDa protein 1-like OS=Mus musculus GN=Hspa1l PE=2 SV=4)

HSP 1 Score: 75.8702 bits (185), Expect = 7.156e-14
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 3
Query:   42 LETYIYNMRSTINDK-LADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y +NM+S + D+ L DKI   DK++I     E L WL+ NQ AEKD+FD K KE+E +CNP+IT+
Sbjct:  544 LESYAFNMKSAVGDEGLKDKISESDKKKILDKCNEVLSWLEANQLAEKDEFDHKRKELENMCNPIITK 611          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP7C_DANRE (Heat shock cognate 71 kDa protein OS=Danio rerio GN=hspa8 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.346e-14
Identity = 33/68 (48.53%), Postives = 49/68 (72.06%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y +NM+ST+ D KL  KI  +DK++I     E + WLD NQ AE+++F+ + KE+E VCNP+IT+
Sbjct:  542 LESYAFNMKSTVEDEKLKGKISDEDKQKILDKCNEVIGWLDKNQTAEREEFEHQQKELEKVCNPIITK 609          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP71_SCHPO (Probable heat shock protein ssa1 OS=Schizosaccharomyces pombe GN=ssa1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.346e-14
Identity = 31/68 (45.59%), Postives = 51/68 (75.00%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y Y++R++++D  L DK+D+ DKE I+  +KE +EWLD N  A KD++++K KE+E V NP++ +
Sbjct:  540 LESYAYSLRNSLDDPNLKDKVDASDKEAIDKAVKETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAK 607          
The following BLAST results are available for this feature:
BLAST of GH733268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
HSP7C_CRIGR5.479e-1448.53Heat shock cognate 71 kDa protein OS=Cricetulus gr... [more]
HSP7C_BOVIN5.479e-1448.53Heat shock cognate 71 kDa protein OS=Bos taurus GN... [more]
HSP70_HYDMA5.479e-1450.00Heat shock 70 kDa protein OS=Hydra magnipapillata ... [more]
HSP70_BRELC5.479e-1450.00Heat shock 70 kDa protein OS=Bremia lactucae GN=HS... [more]
HSP7C_ICTPU7.156e-1448.53Heat shock cognate 71 kDa protein OS=Ictalurus pun... [more]
HSP72_SCHPO7.156e-1445.59Probable heat shock protein ssa2 OS=Schizosaccharo... [more]
HSP70_BLAEM7.156e-1447.06Heat shock 70 kDa protein OS=Blastocladiella emers... [more]
HS71L_MOUSE7.156e-1451.47Heat shock 70 kDa protein 1-like OS=Mus musculus G... [more]
HSP7C_DANRE9.346e-1448.53Heat shock cognate 71 kDa protein OS=Danio rerio G... [more]
HSP71_SCHPO9.346e-1445.59Probable heat shock protein ssa1 OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionU_56 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733268 ID=GH733268; Name=GH733268; organism=Citrus clementina; type=EST; length=252bp
GNGGAGAAAGAGGTGAGGGAGAGGGTTGATTCCAGGAACAGTTAGAAACT
TACATCTACAACATGAGGAGCACCATCAATGACAAGCTTGCGGACAAGAT
TGATTCTGATGATAAGGAGAGGATTGAGAGCACACTGAAGGAAGCTCTCG
AATGGTTGGATGATAATCAGAACGCAGAGAAGGATGATTTTGACGAGAAG
ATGAAGGAGGTGGAAGCTGTATGCAACCCTGTGATTACTCAGGACTCATC
AN
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