GH733268

Overview
NameGH733268
Unique NameGH733268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length252
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HS71L_BOVIN (Heat shock 70 kDa protein 1-like OS=Bos taurus GN=HSPA1L PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.346e-14
Identity = 36/68 (52.94%), Postives = 49/68 (72.06%), Query Frame = 3
Query:   42 LETYIYNMRSTINDK-LADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y +NM+S ++D+ L  KI   DK++I S   E L WL+ NQ AEKD+FD K KE+E VCNP+IT+
Sbjct:  544 LESYAFNMKSAVSDEGLQGKISESDKKKILSKCNEVLLWLEANQLAEKDEFDHKRKELEQVCNPIITK 611          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP7D_MANSE (Heat shock 70 kDa protein cognate 4 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.221e-13
Identity = 32/68 (47.06%), Postives = 49/68 (72.06%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y +NM+ST+ D KL DKI   DK+ I     + ++WLD NQ A+K++++ K KE+E +CNP+IT+
Sbjct:  542 LESYCFNMKSTMEDEKLKDKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGICNPIITK 609          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP70_CHLRE (Heat shock 70 kDa protein OS=Chlamydomonas reinhardtii GN=HSP70 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.221e-13
Identity = 33/68 (48.53%), Postives = 50/68 (73.53%), Query Frame = 3
Query:   42 LETYIYNMRSTIN-DKLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE Y YNMR+TI  DK+A ++ + DKE +E  L  A++WL+ NQ AE ++F+  +KE+E +CNP+IT+
Sbjct:  547 LENYAYNMRNTIREDKVASQLSASDKESMEKALTAAMDWLEANQMAEVEEFEHHLKELEGLCNPIITR 614          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HS71L_PIG (Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.221e-13
Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = 3
Query:   42 LETYIYNMRSTINDK-LADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y +NM+S ++D+ L  KI   DK++I +   EAL WL+ NQ AEKD+FD K +E+E VCNP+IT+
Sbjct:  544 LESYAFNMKSAVSDEGLKGKISDADKKKILNKCNEALSWLEANQLAEKDEFDHKRRELEQVCNPIITK 611          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HS71L_RAT (Heat shock 70 kDa protein 1-like OS=Rattus norvegicus GN=Hspa1l PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.082e-13
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 3
Query:   42 LETYIYNMRSTINDK-LADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y +NM+S + D+ L DKI   DK++I     E L WL+ NQ AEK++FD K KE+E +CNP+IT+
Sbjct:  544 LESYAFNMKSAVGDEGLKDKISESDKKKILDKCSEVLSWLEANQLAEKEEFDHKRKELENMCNPIITK 611          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP7A_CAEEL (Heat shock 70 kDa protein A OS=Caenorhabditis elegans GN=hsp-1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.719e-13
Identity = 32/68 (47.06%), Postives = 50/68 (73.53%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y +N++ TI D KL DKI  +DK++IE    E L+WLD NQ AEK++F+ + K++E + NP+I++
Sbjct:  543 LESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISK 610          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP72_HUMAN (Heat shock-related 70 kDa protein 2 OS=Homo sapiens GN=HSPA2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.719e-13
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y YN++ T+ D KL  KI   DK +I    +E + WLD NQ AEKD+++ K KE+E VCNP+I++
Sbjct:  545 LESYTYNIKQTVEDEKLRGKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISK 612          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP70_ACHKL (Heat shock 70 kDa protein OS=Achlya klebsiana GN=HSP70 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.719e-13
Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVI 236
            LE Y YN+R+T+ND KL  KID  DK+ I+  + + + WLD NQ+AEK++F+ K KE+E + NP++
Sbjct:  545 LENYAYNLRNTLNDEKLQGKIDESDKKVIDDKVTDIINWLDHNQSAEKEEFEAKQKELEGIANPIM 610          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP70_ONCMY (Heat shock cognate 70 kDa protein OS=Oncorhynchus mykiss GN=hsc71 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.552e-13
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y +NM+ST+ D KL  KI  +DK +I     E + WLD NQ AEK++++   KE+E VCNP+IT+
Sbjct:  542 LESYAFNMKSTVEDEKLQGKISDEDKTKILEKCNEVIGWLDKNQTAEKEEYEHHQKELEKVCNPIITK 609          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HS71L_MACFA (Heat shock 70 kDa protein 1-like OS=Macaca fascicularis GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.552e-13
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 3
Query:   42 LETYIYNMRSTINDK-LADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y +NM+S ++D+ L  KI   DK++I     E L WL+ NQ AEKD+FD K KE+E +CNP+IT+
Sbjct:  544 LESYAFNMKSVVSDEGLKGKISESDKKKILDKCNELLSWLEANQLAEKDEFDHKRKELEQMCNPIITK 611          
The following BLAST results are available for this feature:
BLAST of GH733268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
HS71L_BOVIN9.346e-1452.94Heat shock 70 kDa protein 1-like OS=Bos taurus GN=... [more]
HSP7D_MANSE1.221e-1347.06Heat shock 70 kDa protein cognate 4 OS=Manduca sex... [more]
HSP70_CHLRE1.221e-1348.53Heat shock 70 kDa protein OS=Chlamydomonas reinhar... [more]
HS71L_PIG1.221e-1351.47Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=... [more]
HS71L_RAT2.082e-1350.00Heat shock 70 kDa protein 1-like OS=Rattus norvegi... [more]
HSP7A_CAEEL2.719e-1347.06Heat shock 70 kDa protein A OS=Caenorhabditis eleg... [more]
HSP72_HUMAN2.719e-1348.53Heat shock-related 70 kDa protein 2 OS=Homo sapien... [more]
HSP70_ACHKL2.719e-1348.48Heat shock 70 kDa protein OS=Achlya klebsiana GN=H... [more]
HSP70_ONCMY3.552e-1348.53Heat shock cognate 70 kDa protein OS=Oncorhynchus ... [more]
HS71L_MACFA3.552e-1350.00Heat shock 70 kDa protein 1-like OS=Macaca fascicu... [more]

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Properties
Property NameValue
Genbank descriptionU_56 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733268 ID=GH733268; Name=GH733268; organism=Citrus clementina; type=EST; length=252bp
GNGGAGAAAGAGGTGAGGGAGAGGGTTGATTCCAGGAACAGTTAGAAACT
TACATCTACAACATGAGGAGCACCATCAATGACAAGCTTGCGGACAAGAT
TGATTCTGATGATAAGGAGAGGATTGAGAGCACACTGAAGGAAGCTCTCG
AATGGTTGGATGATAATCAGAACGCAGAGAAGGATGATTTTGACGAGAAG
ATGAAGGAGGTGGAAGCTGTATGCAACCCTGTGATTACTCAGGACTCATC
AN
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