GH733268

Overview
NameGH733268
Unique NameGH733268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length252
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP71_HUMAN (Heat shock 70 kDa protein 1A/1B OS=Homo sapiens GN=HSPA1A PE=1 SV=5)

HSP 1 Score: 68.9366 bits (167), Expect = 8.748e-12
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 3
Query:   42 LETYIYNMRSTINDK-LADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVIT 239
            LE+Y +NM+S + D+ L  KI   DK+++    +E + WLD N  AEKD+F+ K KE+E VCNP+I+
Sbjct:  542 LESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIIS 608          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP70_PYRSA (Heat shock 70 kDa protein OS=Pyrenomonas salina GN=HSP70 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.748e-12
Identity = 30/68 (44.12%), Postives = 51/68 (75.00%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE Y YN+R+T+ D KL +KI  +DK+ IE  +KE LE+++ N++ EK++++EK KE++   NP+I++
Sbjct:  548 LENYAYNIRNTVRDEKLKEKIQEEDKKSIEEKVKEVLEFIETNEDLEKEEYEEKEKELKNFANPIISK 615          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP70_CHICK (Heat shock 70 kDa protein OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.748e-12
Identity = 30/68 (44.12%), Postives = 47/68 (69.12%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+Y YNM+ T+ D KL  KI   DK+++    +E +  LD NQ AEK++++ K KE+E +CNP++T+
Sbjct:  545 LESYTYNMKQTVEDEKLKGKISDQDKQKVLDKCQEVISSLDRNQMAEKEEYEHKQKELEKLCNPIVTK 612          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HS71B_PIG (Heat shock 70 kDa protein 1B OS=Sus scrofa GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.748e-12
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 3
Query:   42 LETYIYNMRSTINDK-LADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVIT 239
            LE+Y +NM+S + D+ L  KI   DK+++    +E + WLD N  AEKD+F+ K KE+E VCNP+I+
Sbjct:  542 LESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIIS 608          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HS71A_PIG (Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA1A PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.748e-12
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 3
Query:   42 LETYIYNMRSTINDK-LADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVIT 239
            LE+Y +NM+S + D+ L  KI   DK+++    +E + WLD N  AEKD+F+ K KE+E VCNP+I+
Sbjct:  542 LESYAFNMKSVVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIIS 608          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP74_TRYBB (Heat shock 70 kDa protein 4 OS=Trypanosoma brucei brucei PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.492e-11
Identity = 28/68 (41.18%), Postives = 49/68 (72.06%), Query Frame = 3
Query:   42 LETYIYNMRSTIND-KLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE Y ++M++TIND  +A K+D  DK  + + ++EAL WL+DNQ A  ++++ + KE+E VC P++++
Sbjct:  545 LENYAFSMKNTINDPNVAGKLDDADKNAVTTAVEEALRWLNDNQEASLEEYNHRQKELEGVCAPILSK 612          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP70_THEAN (Heat shock 70 kDa protein OS=Theileria annulata GN=TA11610 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.492e-11
Identity = 28/68 (41.18%), Postives = 52/68 (76.47%), Query Frame = 3
Query:   42 LETYIYNMRSTIN-DKLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE Y Y+M++T++ D++  K+ +D+ +   ST+ +AL+W++ NQ AE D++++K+K VE VCNP++T+
Sbjct:  543 LENYCYSMKNTLSEDQVKQKLGADEVDSALSTITDALKWVEANQLAEHDEYEDKLKHVEGVCNPLVTK 610          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP70_LEIDO (Heat shock 70 kDa protein OS=Leishmania donovani GN=HSP70 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.492e-11
Identity = 28/68 (41.18%), Postives = 46/68 (67.65%), Query Frame = 3
Query:   42 LETYIYNMRSTINDK-LADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE Y Y+M++T+ D  ++ K+D  DK  +   +   LEWL  NQ A K++++ K KE+E+VCNP++T+
Sbjct:  544 LENYAYSMKNTLGDSNVSGKLDDSDKATLNKEIDVTLEWLSSNQEATKEEYEHKQKELESVCNPIMTK 611          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HS7C2_DICDI (Heat shock cognate 70 kDa protein 2 OS=Dictyostelium discoideum GN=hspE-1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.492e-11
Identity = 29/68 (42.65%), Postives = 50/68 (73.53%), Query Frame = 3
Query:   42 LETYIYNMRSTI-NDKLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE Y Y +RSTI +DK+A K+  +D++ +E    EA+ WL  N +A K+++++ MK++EAVC+P+I++
Sbjct:  541 LENYAYTVRSTIKDDKIAAKLSKEDRKTVEEKSDEAINWLHANDSATKEEYEKAMKDLEAVCSPIISK 608          
BLAST of GH733268 vs. ExPASy Swiss-Prot
Match: HSP71_ORYLA (Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.949e-11
Identity = 29/68 (42.65%), Postives = 48/68 (70.59%), Query Frame = 3
Query:   42 LETYIYNMRSTI-NDKLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVITQ 242
            LE+  +N++S+  +D L DKI  +D++R+     E + WL++NQ A+KD+F  K KE+E VCNP+I++
Sbjct:  544 LESLAFNLKSSAQDDSLKDKISQEDRKRVVEKCDETIAWLENNQLADKDEFQHKQKELEKVCNPIISK 611          
The following BLAST results are available for this feature:
BLAST of GH733268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
HSP71_HUMAN8.748e-1246.27Heat shock 70 kDa protein 1A/1B OS=Homo sapiens GN... [more]
HSP70_PYRSA8.748e-1244.12Heat shock 70 kDa protein OS=Pyrenomonas salina GN... [more]
HSP70_CHICK8.748e-1244.12Heat shock 70 kDa protein OS=Gallus gallus PE=3 SV... [more]
HS71B_PIG8.748e-1246.27Heat shock 70 kDa protein 1B OS=Sus scrofa GN=HSPA... [more]
HS71A_PIG8.748e-1246.27Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA... [more]
HSP74_TRYBB1.492e-1141.18Heat shock 70 kDa protein 4 OS=Trypanosoma brucei ... [more]
HSP70_THEAN1.492e-1141.18Heat shock 70 kDa protein OS=Theileria annulata GN... [more]
HSP70_LEIDO1.492e-1141.18Heat shock 70 kDa protein OS=Leishmania donovani G... [more]
HS7C2_DICDI1.492e-1142.65Heat shock cognate 70 kDa protein 2 OS=Dictyosteli... [more]
HSP71_ORYLA1.949e-1142.65Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionU_56 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733268 ID=GH733268; Name=GH733268; organism=Citrus clementina; type=EST; length=252bp
GNGGAGAAAGAGGTGAGGGAGAGGGTTGATTCCAGGAACAGTTAGAAACT
TACATCTACAACATGAGGAGCACCATCAATGACAAGCTTGCGGACAAGAT
TGATTCTGATGATAAGGAGAGGATTGAGAGCACACTGAAGGAAGCTCTCG
AATGGTTGGATGATAATCAGAACGCAGAGAAGGATGATTTTGACGAGAAG
ATGAAGGAGGTGGAAGCTGTATGCAACCCTGTGATTACTCAGGACTCATC
AN
back to top