GH733272

Overview
NameGH733272
Unique NameGH733272
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length282
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: AT8A1_HUMAN (Probable phospholipid-transporting ATPase IA OS=Homo sapiens GN=ATP8A1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 3
Query:   57 ERSYSLLNVLEFSSSRKRMSVIVRSXEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTL 269
            E  Y LLNVLEF+S+RKRMSVIVR+  G L L  KGAD+V+++RLAE  + ++E T +H+ ++A  GLRTL
Sbjct:  538 EERYELLNVLEFTSARKRMSVIVRTPSGKLRLYCKGADTVIYDRLAETSK-YKEITLKHLEQFATEGLRTL 607          
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: AT8A1_BOVIN (Probable phospholipid-transporting ATPase IA OS=Bos taurus GN=ATP8A1 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 3
Query:   57 ERSYSLLNVLEFSSSRKRMSVIVRSXEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTL 269
            E  Y LLNVLEF+S+RKRMSVIVR+  G L L  KGAD+V+++RLAE  + ++E T +H+ ++A  GLRTL
Sbjct:  523 EERYELLNVLEFTSARKRMSVIVRTPSGKLRLYCKGADTVIYDRLAETSK-YKEITLKHLEQFATEGLRTL 592          
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: ATC3_YEAST (Probable phospholipid-transporting ATPase DRS2 OS=Saccharomyces cerevisiae GN=DRS2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.209e-14
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 3
Query:   48 TKVERSYSLLNVLEFSSSRKRMSVIVRSXEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTL 269
            T  E+ Y LLN+ EF+S+RKRMS I R  +G++ L  KGAD+V+ ERL +   ++ E T  H+ +YA  GLRTL
Sbjct:  684 TGEEKEYQLLNICEFNSTRKRMSAIFRFPDGSIKLFCKGADTVILERLDDEANQYVEATMRHLEDYASEGLRTL 757          
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: AT8A2_HUMAN (Probable phospholipid-transporting ATPase IB OS=Homo sapiens GN=ATP8A2 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.225e-13
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 3
Query:   57 ERSYSLLNVLEFSSSRKRMSVIVRSXEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTL 269
            E+++ +LNVLEFSS RKRMSVIVR+  G L L  KGAD+V+FERL+++ + + E+T  H+  +A  GLRTL
Sbjct:  518 EQTFGILNVLEFSSDRKRMSVIVRTPSGRLRLYCKGADNVIFERLSKDSK-YMEETLCHLEYFATEGLRTL 587          
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: ALA3_ARATH (Phospholipid-transporting ATPase 3 OS=Arabidopsis thaliana GN=ALA3 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.599e-13
Identity = 35/69 (50.72%), Postives = 50/69 (72.46%), Query Frame = 3
Query:   63 SYSLLNVLEFSSSRKRMSVIVRSXEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTL 269
            +Y +LNVLEF+S+RKR SV+ R  +G L+L  KGAD+V+FERLA    +  + T+EH+  +  +GLRTL
Sbjct:  562 AYEILNVLEFNSTRKRQSVVCRFPDGRLVLYCKGADNVIFERLANGMDDVRKVTREHLEHFGSSGLRTL 630          
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: AT8B2_HUMAN (Probable phospholipid-transporting ATPase ID OS=Homo sapiens GN=ATP8B2 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.728e-13
Identity = 35/70 (50.00%), Postives = 51/70 (72.86%), Query Frame = 3
Query:   63 SYSLLNVLEFSSSRKRMSVIVRSXEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTLL 272
            +Y LL +L+F++ RKRMSVIVR+ EG + L  KGAD+++ +RL  + +E    T +H+NEYA  GLRTL+
Sbjct:  547 TYQLLAILDFNNIRKRMSVIVRNPEGKIRLYCKGADTILLDRLHHSTQELLNTTMDHLNEYAGEGLRTLV 616          
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: AT8A2_MOUSE (Probable phospholipid-transporting ATPase IB OS=Mus musculus GN=Atp8a2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.728e-13
Identity = 39/71 (54.93%), Postives = 53/71 (74.65%), Query Frame = 3
Query:   57 ERSYSLLNVLEFSSSRKRMSVIVRSXEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTL 269
            E+++ +LNVLEFSS RKRMSVIVR   G L L  KGAD+V+FERL+++ + + E+T  H+  +A  GLRTL
Sbjct:  518 EQTFGILNVLEFSSDRKRMSVIVRLPSGQLRLYCKGADNVIFERLSKDSK-YMEETLCHLEYFATEGLRTL 587          
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: AT8B2_MOUSE (Probable phospholipid-transporting ATPase ID OS=Mus musculus GN=Atp8b2 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 7.938e-13
Identity = 35/70 (50.00%), Postives = 50/70 (71.43%), Query Frame = 3
Query:   63 SYSLLNVLEFSSSRKRMSVIVRSXEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTLL 272
            +Y LL +L+F++ RKRMSVIVR+ EG + L  KGAD+++ +RL    +E    T +H+NEYA  GLRTL+
Sbjct:  547 TYQLLAILDFNNIRKRMSVIVRNPEGKIRLYCKGADTILLDRLHPPTQELLSSTTDHLNEYAGDGLRTLV 616          
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: AT8B4_HUMAN (Probable phospholipid-transporting ATPase IM OS=Homo sapiens GN=ATP8B4 PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 1.768e-12
Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 3
Query:   63 SYSLLNVLEFSSSRKRMSVIVRSXEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTL 269
            +Y LL  L+F+++RKRMSVIVR+ EG + L SKGAD+++FE+L  +       T +H++E+A  GLRTL
Sbjct:  528 TYQLLAFLDFNNTRKRMSVIVRNPEGQIKLYSKGADTILFEKLHPSNEVLLSLTSDHLSEFAGEGLRTL 596          
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: AT8B5_MOUSE (Probable phospholipid-transporting ATPase FetA OS=Mus musculus GN=Feta PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.145e-12
Identity = 33/71 (46.48%), Postives = 50/71 (70.42%), Query Frame = 3
Query:   60 RSYSLLNVLEFSSSRKRMSVIVRSXEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTLL 272
            R Y LL +L+FS+ RKRMSVIVR+ E  ++L  KGAD++++E L  +     E T +H++++A  GLRTL+
Sbjct:  550 RVYRLLAILDFSNERKRMSVIVRTPEDRVMLFCKGADTIIYELLHPSCASLSEVTMDHLDDFASEGLRTLM 620          
The following BLAST results are available for this feature:
BLAST of GH733272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
AT8A1_HUMAN1.447e-1456.34Probable phospholipid-transporting ATPase IA OS=Ho... [more]
AT8A1_BOVIN1.447e-1456.34Probable phospholipid-transporting ATPase IA OS=Bo... [more]
ATC3_YEAST4.209e-1448.65Probable phospholipid-transporting ATPase DRS2 OS=... [more]
AT8A2_HUMAN1.225e-1354.93Probable phospholipid-transporting ATPase IB OS=Ho... [more]
ALA3_ARATH1.599e-1350.72Phospholipid-transporting ATPase 3 OS=Arabidopsis ... [more]
AT8B2_HUMAN2.728e-1350.00Probable phospholipid-transporting ATPase ID OS=Ho... [more]
AT8A2_MOUSE2.728e-1354.93Probable phospholipid-transporting ATPase IB OS=Mu... [more]
AT8B2_MOUSE7.938e-1350.00Probable phospholipid-transporting ATPase ID OS=Mu... [more]
AT8B4_HUMAN1.768e-1249.28Probable phospholipid-transporting ATPase IM OS=Ho... [more]
AT8B5_MOUSE5.145e-1246.48Probable phospholipid-transporting ATPase FetA OS=... [more]

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Properties
Property NameValue
Genbank descriptionU_60 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733272 ID=GH733272; Name=GH733272; organism=Citrus clementina; type=EST; length=282bp
TGAAGACTNAACAGCATCTCAGTGCATGAGTTAGATCCAGTCCTGGCACG
AAAGTTGAAAGGTCGTACAGTCTTTTGAATGTCTTGGAGTTTAGTAGCTC
TAGAAAACGGATGTCTGTGATTGTAAGAAGCNAGGAGGGAACCCTGCTTC
TACTTTCTAAAGGAGCTGACAGTGTAATGTTTGAAAGACTTGCGGAAAAT
GGAAGAGAGTTTGAAGAGCAGACAAAGGAACACATCAATGAGTATGCTGA
TGCTGGTTTGAGGACCTTACTCAGGACTCATC
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