GH733272

Overview
NameGH733272
Unique NameGH733272
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length282
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: YOOC_SCHPO (Probable phospholipid-transporting ATPase C887.12 OS=Schizosaccharomyces pombe GN=SPBC887.12 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.554e-11
Identity = 33/71 (46.48%), Postives = 49/71 (69.01%), Query Frame = 3
Query:   57 ERSYSLLNVLEFSSSRKRMSVIVRSXEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTL 269
            + SY LL++ EF+S+RKRMS++ R  +G + L  KGAD+V+ ERLA +   + + T  H+ +YA  GLRTL
Sbjct:  643 DESYELLHICEFNSTRKRMSIVFRCPDGKIRLYVKGADTVIMERLASD-NPYLQTTIHHLEDYATVGLRTL 712          
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: ATCX_SCHPO (Putative phospholipid-transporting ATPase C24B11.12c OS=Schizosaccharomyces pombe GN=SPAC24B11.12c PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.554e-11
Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 3
Query:   66 YSLLNVLEFSSSRKRMSVIVRSXEGTLLLLSKGADSVMFERLAENGR-EFEEQTKEHINEYADAGLRTL 269
            + L++ +EFSS+RKRMSVIV+  +   +L+ KGADS++FERL  N + E  + T EH+  +A  GLRTL
Sbjct:  733 FKLMDTIEFSSARKRMSVIVKGPDNRYVLICKGADSIIFERLEPNEQVELRKTTSEHLRIFALEGLRTL 801          
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: ATCZ_SCHPO (Putative phospholipid-transporting ATPase C4F10.16c OS=Schizosaccharomyces pombe GN=SPAC4F10.16c PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.335e-11
Identity = 29/70 (41.43%), Postives = 50/70 (71.43%), Query Frame = 3
Query:   60 RSYSLLNVLEFSSSRKRMSVIVRSXEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTL 269
            +++ +L+++ F+S+RKRMSVI+R  +G + L+ KGAD+V+F RL+       E+TK+H+  ++  G RTL
Sbjct:  755 KNFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVIFPRLSSGQNNIIEKTKKHLASFSSEGFRTL 824          
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: ATC4_YEAST (Probable phospholipid-transporting ATPase DNF2 OS=Saccharomyces cerevisiae GN=DNF2 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.689e-11
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:   54 VERSYSLLNVLEFSSSRKRMSVIVR------SXEGTLLLLSKGADSVMFERL--AENGREFEEQTKEHINEYADAGLRTL 269
            V++ + +LNVLEF+SSRKRMS I++        E   LL+ KGADSV++ RL   +N     E+T  H+ EYA  GLRTL
Sbjct:  875 VQKEFQVLNVLEFNSSRKRMSCIIKIPGSTPKDEPKALLICKGADSVIYSRLDRTQNDATLLEKTALHLEEYATEGLRTL 954          
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: AT8B3_HUMAN (Probable phospholipid-transporting ATPase IK OS=Homo sapiens GN=ATP8B3 PE=2 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.689e-11
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 3
Query:   57 ERSYSLLNVLEFSSSRKRMSVIVRSXEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTL 269
            ER Y +L +++F+S+RKRMSV+VR  EG + L +KGAD+V+FERL   G   E  T+E +  +A   LRTL
Sbjct:  626 ERVYQVLAIMDFNSTRKRMSVLVRKPEGAICLYTKGADTVIFERLHRRG-AMEFATEEALAAFAQETLRTL 695          
BLAST of GH733272 vs. ExPASy Swiss-Prot
Match: AT8B1_XENTR (Probable phospholipid-transporting ATPase IC OS=Xenopus tropicalis GN=atp8b1 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.703e-11
Identity = 32/71 (45.07%), Postives = 53/71 (74.65%), Query Frame = 3
Query:   57 ERSYSLLNVLEFSSSRKRMSVIVRSXEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTL 269
            E++Y +L +L+F+S RKRMS+IVR  +G + L  KGAD+V++ERL  +    ++QT++ ++ +A+A LRTL
Sbjct:  583 EKTYEVLAILDFNSDRKRMSIIVRQPDGRIRLYCKGADTVIYERLHPD-NPIKDQTQKALDIFANASLRTL 652          
The following BLAST results are available for this feature:
BLAST of GH733272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
YOOC_SCHPO2.554e-1146.48Probable phospholipid-transporting ATPase C887.12 ... [more]
ATCX_SCHPO2.554e-1149.28Putative phospholipid-transporting ATPase C24B11.1... [more]
ATCZ_SCHPO3.335e-1141.43Putative phospholipid-transporting ATPase C4F10.16... [more]
ATC4_YEAST5.689e-1147.50Probable phospholipid-transporting ATPase DNF2 OS=... [more]
AT8B3_HUMAN5.689e-1149.30Probable phospholipid-transporting ATPase IK OS=Ho... [more]
AT8B1_XENTR9.703e-1145.07Probable phospholipid-transporting ATPase IC OS=Xe... [more]

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Properties
Property NameValue
Genbank descriptionU_60 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733272 ID=GH733272; Name=GH733272; organism=Citrus clementina; type=EST; length=282bp
TGAAGACTNAACAGCATCTCAGTGCATGAGTTAGATCCAGTCCTGGCACG
AAAGTTGAAAGGTCGTACAGTCTTTTGAATGTCTTGGAGTTTAGTAGCTC
TAGAAAACGGATGTCTGTGATTGTAAGAAGCNAGGAGGGAACCCTGCTTC
TACTTTCTAAAGGAGCTGACAGTGTAATGTTTGAAAGACTTGCGGAAAAT
GGAAGAGAGTTTGAAGAGCAGACAAAGGAACACATCAATGAGTATGCTGA
TGCTGGTTTGAGGACCTTACTCAGGACTCATC
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