GH733292
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1_CAEEL (DNA topoisomerase 1 OS=Caenorhabditis elegans GN=top-1 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.230e-13 Identity = 35/85 (41.18%), Postives = 56/85 (65.88%), Query Frame = -1 Query: 31 KGKPPLMKDSDG--KRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 279 K K +K+++ K R E ++K + +++K++ K++ K +ALGTSK+NY+DPRITVAWCK+ EVP+EK+F K+ Sbjct: 701 KDKKKEVKEAEAALKSARGAEKEKAQKKYDRLKEQLKKLKISRTDKDENKQIALGTSKLNYIDPRITVAWCKKFEVPLEKVFTKT 785
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1_SCHPO (DNA topoisomerase 1 OS=Schizosaccharomyces pombe GN=top1 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 1.777e-12 Identity = 32/64 (50.00%), Postives = 48/64 (75.00%), Query Frame = -1 Query: 28 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 219 E LE+++ + N +I M M K++ KT ALGTSKINY+DPR+T ++ KR +VPIEK+F+K++ Sbjct: 735 EQLEKRLNKLNERINVMRTQMIDKDENKTTALGTSKINYIDPRLTYSFSKREDVPIEKLFSKTI 798
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1M_PANTR (DNA topoisomerase I, mitochondrial OS=Pan troglodytes GN=TOP1MT PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.958e-12 Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = -1 Query: 31 DGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 249 DGK + L E R + + ++ ++ KE+ K VALGTSK+NYLDPRI++AWCKR VP+EKI++K+ Sbjct: 513 DGKSRSVL--EKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAWCKRFRVPVEKIYSKT 583
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1M_MOUSE (DNA topoisomerase I, mitochondrial OS=Mus musculus GN=Top1mt PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.958e-12 Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = -1 Query: 31 KKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 282 +K + L D K K L + R++ + ++ ++ KE+ K VALGT+K+NYLDPRI++AWCKR VP+EKI+NK+ Sbjct: 495 QKAETDLRMRGDSKPKSFLQKQ---RRLLKLEEQLARLCAKATDKEENKQVALGTAKLNYLDPRISIAWCKRFGVPVEKIYNKT 575
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1M_HUMAN (DNA topoisomerase I, mitochondrial OS=Homo sapiens GN=TOP1MT PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.958e-12 Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = -1 Query: 31 DGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 249 DGK + L E R + + ++ ++ KE+ K VALGTSK+NYLDPRI++AWCKR VP+EKI++K+ Sbjct: 513 DGKSRSVL--EKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAWCKRFRVPVEKIYSKT 583
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1M_RAT (DNA topoisomerase I, mitochondrial OS=Rattus norvegicus GN=Top1mt PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.169e-12 Identity = 37/84 (44.05%), Postives = 52/84 (61.90%), Query Frame = -1 Query: 31 KKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 282 +K + L D K K L + K+ + A++ D KE+ K VALGT+K+NYLDPRI++AWCKR VP+EKI+NK+ Sbjct: 495 QKAETDLRMRGDSKSKSFLQKQQRLLKLEEQLARLCTKATD---KEENKQVALGTAKLNYLDPRISIAWCKRFGVPVEKIYNKT 575
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1_YEAST (DNA topoisomerase 1 OS=Saccharomyces cerevisiae GN=TOP1 PE=1 SV=2) HSP 1 Score: 67.0106 bits (162), Expect = 3.351e-11 Identity = 29/64 (45.31%), Postives = 47/64 (73.44%), Query Frame = -1 Query: 28 EALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 219 E ++ ++ + +I+ +K KE+ V+LGTSKINY+DPR++V +CK+++VPIEKIF K+L Sbjct: 689 EKIKAQVEKLEQRIQTSSIQLKDKEENSQVSLGTSKINYIDPRLSVVFCKKYDVPIEKIFTKTL 752 The following BLAST results are available for this feature:
BLAST of GH733292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >GH733292 ID=GH733292; Name=GH733292; organism=Citrus clementina; type=EST; length=306bpback to top |