GH733308

Overview
NameGH733308
Unique NameGH733308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14610 contig Ccv1_Contig14610:404..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: PDR12_YEAST (ATP-dependent permease PDR12 OS=Saccharomyces cerevisiae GN=PDR12 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.521e-16
Identity = 44/85 (51.76%), Postives = 58/85 (68.24%), Query Frame = -3
Query:   16 DALVGLPGVNGLSTEQRKRLTIAVELVANPSII-FMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 267
            +ALVG  G  GL+ EQRK+L+I VELVA PS++ F+DEPTSGLD               D+G++++CTIHQPS  +FE FD +LL
Sbjct:  973 EALVGKTG-RGLNVEQRKKLSIGVELVAKPSLLLFLDEPTSGLDSQSAWSIVQFMRALADSGQSILCTIHQPSATLFEQFDRLLL 1056          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: BFR1_SCHPO (Brefeldin A resistance protein OS=Schizosaccharomyces pombe GN=bfr1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.338e-15
Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = -3
Query:   16 DALVGLPGVNGLSTEQRKRLTIAVELVANPSII-FMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 267
            +A++G PG +GL+ EQRKR TI VEL A P+++ F+DEPTSGLD               D G+ ++CTIHQPS  +F+ FD +LL
Sbjct: 1013 EAIIGTPG-SGLNVEQRKRATIGVELAAKPALLLFLDEPTSGLDSQSAWSIVCFLRKLADAGQAILCTIHQPSAVLFDQFDRLLL 1096          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCG5_DICDI (ABC transporter G family member 5 OS=Dictyostelium discoideum GN=abcG5 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.338e-15
Identity = 43/87 (49.43%), Postives = 55/87 (63.22%), Query Frame = -3
Query:   16 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDT-GRTVVCTIHQPSIDIFEAFDEVLL 273
            ++D  +G+ G NGLS  QRKR+ I VEL +NP I+F+DEPTSGLD                   RTV+CT+HQPS  IFE FD++LL
Sbjct: 1028 IKDLKIGVLG-NGLSVSQRKRVNIGVELASNPEILFLDEPTSGLDSGDAFKVIDVVNKIAKVMNRTVICTVHQPSAAIFEFFDQLLL 1113          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCG3_DICDI (ABC transporter G family member 3 OS=Dictyostelium discoideum GN=abcG3 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.981e-15
Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = -3
Query:   16 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 273
            +++  +G     G+S   RK+++I +EL ++P +IF+DEPTSGLD               ++GRTVVCTIHQPS +IFE FD++LL
Sbjct:  922 MQNTTIGPNPTLGISLANRKKVSIGIELASDPHLIFLDEPTSGLDSSAALKVMNCVKKIAESGRTVVCTIHQPSQEIFEKFDQLLL 1007          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: CDR2_CANAL (Multidrug resistance protein CDR2 OS=Candida albicans GN=CDR2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.084e-15
Identity = 44/84 (52.38%), Postives = 54/84 (64.29%), Query Frame = -3
Query:   19 DALVGLPGVNGLSTEQRKRLTIAVELVANPSII-FMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVL 267
            DALVG+ G  GL+ EQRKRLTI VELVA P ++ F+DEPTSGLD               D G+ ++CTIHQPS  I   FD++L
Sbjct:  989 DALVGVAG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSALIMAEFDKLL 1071          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCG6_DICDI (ABC transporter G family member 6 OS=Dictyostelium discoideum GN=abcG6 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.084e-15
Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = -3
Query:   16 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDT-GRTVVCTIHQPSIDIFEAFDEVLL 273
            ++D  +G+ G +GLS  QRKR+ I VEL +NP I+F+DEPTSGLD                   RTV+CT+HQPS  IFE FD++LL
Sbjct: 1053 IKDLKIGVLG-DGLSVSQRKRVNIGVELASNPEILFLDEPTSGLDSGDAFKVIDVVNKIAKVMNRTVICTVHQPSAAIFEFFDQLLL 1138          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCG2_DICDI (ABC transporter G family member 2 OS=Dictyostelium discoideum GN=abcG2 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.084e-15
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = -3
Query:   16 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 246
            G  GLS  QRKR+ I VEL ++P ++F+DEPTSGLD                +GR+++CTIHQPS  IF+ FD +LL
Sbjct:  856 GEEGLSLSQRKRVNIGVELASDPQLLFLDEPTSGLDSSAALKVMNLIKKIASSGRSIICTIHQPSTSIFKQFDHLLL 932          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: CDR1_CANAL (Multidrug resistance protein CDR1 OS=Candida albicans GN=CDR1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.640e-15
Identity = 44/84 (52.38%), Postives = 53/84 (63.10%), Query Frame = -3
Query:   19 DALVGLPGVNGLSTEQRKRLTIAVELVANPSII-FMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVL 267
            DALVG+ G  GL+ EQRKRLTI VELVA P ++ F+DEPTSGLD               D G+ ++CTIHQPS  I   FD +L
Sbjct:  991 DALVGVAG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSALIMAEFDRLL 1073          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: PDR10_YEAST (ATP-dependent permease PDR10 OS=Saccharomyces cerevisiae GN=PDR10 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.673e-15
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = -3
Query:   19 DALVGLPGVNGLSTEQRKRLTIAVELVANPS-IIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVL 267
            DA+VG+PG  GL+ EQRKRLTI VEL A P  ++F+DEPTSGLD                 G+ ++CTIHQPS  + + FD +L
Sbjct: 1054 DAIVGVPG-EGLNVEQRKRLTIGVELAAKPKLLVFLDEPTSGLDSQTAWSTCQLMKKLASRGQAILCTIHQPSALLMQEFDRLL 1136          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: PDH1_CANGA (ATP-binding cassette transporter CGR1 OS=Candida glabrata GN=PDH1 PE=3 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 8.673e-15
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = -3
Query:   19 DALVGLPGVNGLSTEQRKRLTIAVELVANPS-IIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVL 267
            DA+VG+PG  GL+ EQRKRLTI VEL A P  ++F+DEPTSGLD               + G+ ++CTIHQPS  + + FD +L
Sbjct: 1016 DAVVGVPG-EGLNVEQRKRLTIGVELAAKPKLLVFLDEPTSGLDSQTAWATCQLMKKLANHGQAILCTIHQPSAMLMQEFDRLL 1098          
The following BLAST results are available for this feature:
BLAST of GH733308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
PDR12_YEAST3.521e-1651.76ATP-dependent permease PDR12 OS=Saccharomyces cere... [more]
BFR1_SCHPO1.338e-1548.24Brefeldin A resistance protein OS=Schizosaccharomy... [more]
ABCG5_DICDI1.338e-1549.43ABC transporter G family member 5 OS=Dictyostelium... [more]
ABCG3_DICDI2.981e-1544.19ABC transporter G family member 3 OS=Dictyostelium... [more]
CDR2_CANAL5.084e-1552.38Multidrug resistance protein CDR2 OS=Candida albic... [more]
ABCG6_DICDI5.084e-1548.28ABC transporter G family member 6 OS=Dictyostelium... [more]
ABCG2_DICDI5.084e-1548.05ABC transporter G family member 2 OS=Dictyostelium... [more]
CDR1_CANAL6.640e-1552.38Multidrug resistance protein CDR1 OS=Candida albic... [more]
PDR10_YEAST8.673e-1548.81ATP-dependent permease PDR10 OS=Saccharomyces cere... [more]
PDH1_CANGA8.673e-1548.81ATP-binding cassette transporter CGR1 OS=Candida g... [more]

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Properties
Property NameValue
Genbank descriptionU_108 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733308 ID=GH733308; Name=GH733308; organism=Citrus clementina; type=EST; length=293bp
GACTGCGTACCAATTCAGCAATACCTCATCAAATGCTTCAAAAATGTCTA
TGCTTGGCTGATGAATTGTGCACACAACCGTTCTCCCTGTATCCACTGTA
TTTCTAACCGTACGCACGACAATAGCAGCTGCTCTAGCATCAAGGCCAGA
TGTTGGCTCGTCCATGAAGATGATTGAAGGGTTAGCAACCAATTCTACAG
CAATTGTCAATCTCTTCCTTTGCTCTGTTGAAAGACCATTTACTCCTGGA
AGGCCAACCAAAGCATCCCTCAATGGTTTACTCAGGACTCATC
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