GH733308

Overview
NameGH733308
Unique NameGH733308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14610 contig Ccv1_Contig14610:404..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: WHITE_LUCCU (Protein white OS=Lucilia cuprina GN=W PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.636e-13
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = -3
Query:   16 RDALVGLPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 270
            ++ ++G+PG V GLS  +RKRL  A E + +P ++  DEPTSGLD                 G+TV+ TIHQPS ++FE FD++LL
Sbjct:  217 QNTIIGVPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAASVVQVLKKLSQRGKTVILTIHQPSSELFELFDKILL 302          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB7G_ARATH (ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.636e-13
Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = -3
Query:   16 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 267
            D+ VG   V G+S  ++KRL++A EL+A+PS+IF DEPT+GLD                 G TV+C+IHQP   ++  FD+++L
Sbjct:  205 DSCVGDAKVRGISGGEKKRLSLACELIASPSVIFADEPTTGLDAFQAEKVMETLQKLAQDGHTVICSIHQPRGSVYAKFDDIVL 288          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCG1_HUMAN (ATP-binding cassette sub-family G member 1 OS=Homo sapiens GN=ABCG1 PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 2.136e-13
Identity = 36/71 (50.70%), Postives = 45/71 (63.38%), Query Frame = -3
Query:   22 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEV 234
            LS  QRKRL IA+ELV NP ++F DEPTSGLD                 GR+++CTIHQPS  +FE FD++
Sbjct:  217 LSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQL 287          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: WHITE_DROME (Protein white OS=Drosophila melanogaster GN=w PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.790e-13
Identity = 37/83 (44.58%), Postives = 51/83 (61.45%), Query Frame = -3
Query:   16 LVGLPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 261
            ++G+PG V GLS  +RKRL  A E + +P ++  DEPTSGLD                 G+TV+ TIHQPS ++FE FD++LL
Sbjct:  231 IIGVPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILL 313          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB22G_ARATH (ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.759e-13
Identity = 34/85 (40.00%), Postives = 53/85 (62.35%), Query Frame = -3
Query:   16 RDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 270
            +D ++G   V G+S  +RKR++I  E++ NPS++ +DEPTSGLD               + G+TV+ TIHQPS  +F  FD+++L
Sbjct:  291 QDTMIGGAFVRGVSGGERKRVSIGNEIIINPSLLLLDEPTSGLDSTTALRTILMLHDIAEAGKTVITTIHQPSSRLFHRFDKLIL 375          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB13G_ARATH (ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = -3
Query:   16 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 267
            D  +G   + G+S  ++KRL+IA+E++  PS++F+DEPTSGLD                +G+TVV +IHQPS ++F  FD++LL
Sbjct:  143 DRTIGNWHLRGISGGEKKRLSIALEVLTKPSLLFLDEPTSGLDSASAFFVVQILRNIASSGKTVVSSIHQPSGEVFALFDDLLL 226          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCG2_PIG (ATP-binding cassette sub-family G member 2 OS=Sus scrofa GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.117e-13
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = -3
Query:   16 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 267
            D+ VG   + G+S  +RKR +IA+EL+ +PSI+F+DEPT+GLD                 GRT++ +IHQP   IF+ FD + L
Sbjct:  175 DSKVGTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTL 258          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCG2_BOVIN (ATP-binding cassette sub-family G member 2 OS=Bos taurus GN=ABCG2 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 8.117e-13
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = -3
Query:   16 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 267
            D+ VG   + G+S  +RKR +IA+EL+ +PSI+F+DEPT+GLD                 GRT++ +IHQP   IF+ FD + L
Sbjct:  174 DSKVGTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTL 257          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCGG_DICDI (ABC transporter G family member 16 OS=Dictyostelium discoideum GN=abcG16 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = -3
Query:   16 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 240
            +G++ EQRKR+ IA+E+ + P I+F+DEPT+GL                  GR+V+CTIHQPS  IF+ FD +LL
Sbjct:  982 HGITQEQRKRVNIAIEMASLPDILFLDEPTTGLTSVAAELIMQLIKRVALDGRSVICTIHQPSETIFKKFDSILL 1056          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCG2_MOUSE (ATP-binding cassette sub-family G member 2 OS=Mus musculus GN=Abcg2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = -3
Query:   16 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 267
            D+ VG   + G+S  +RKR +I +EL+ +PSI+F+DEPT+GLD                 GRT++ +IHQP   IF+ FD + L
Sbjct:  174 DSKVGTQFIRGISGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTL 257          
The following BLAST results are available for this feature:
BLAST of GH733308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
WHITE_LUCCU1.636e-1343.02Protein white OS=Lucilia cuprina GN=W PE=2 SV=2[more]
AB7G_ARATH1.636e-1341.67ABC transporter G family member 7 OS=Arabidopsis t... [more]
ABCG1_HUMAN2.136e-1350.70ATP-binding cassette sub-family G member 1 OS=Homo... [more]
WHITE_DROME2.790e-1344.58Protein white OS=Drosophila melanogaster GN=w PE=1... [more]
AB22G_ARATH4.759e-1340.00ABC transporter G family member 22 OS=Arabidopsis ... [more]
AB13G_ARATH6.215e-1341.67ABC transporter G family member 13 OS=Arabidopsis ... [more]
ABCG2_PIG8.117e-1341.67ATP-binding cassette sub-family G member 2 OS=Sus ... [more]
ABCG2_BOVIN8.117e-1341.67ATP-binding cassette sub-family G member 2 OS=Bos ... [more]
ABCGG_DICDI1.060e-1245.33ABC transporter G family member 16 OS=Dictyosteliu... [more]
ABCG2_MOUSE1.808e-1240.48ATP-binding cassette sub-family G member 2 OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionU_108 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733308 ID=GH733308; Name=GH733308; organism=Citrus clementina; type=EST; length=293bp
GACTGCGTACCAATTCAGCAATACCTCATCAAATGCTTCAAAAATGTCTA
TGCTTGGCTGATGAATTGTGCACACAACCGTTCTCCCTGTATCCACTGTA
TTTCTAACCGTACGCACGACAATAGCAGCTGCTCTAGCATCAAGGCCAGA
TGTTGGCTCGTCCATGAAGATGATTGAAGGGTTAGCAACCAATTCTACAG
CAATTGTCAATCTCTTCCTTTGCTCTGTTGAAAGACCATTTACTCCTGGA
AGGCCAACCAAAGCATCCCTCAATGGTTTACTCAGGACTCATC
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