GH733308

Overview
NameGH733308
Unique NameGH733308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14610 contig Ccv1_Contig14610:404..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB14G_ARATH (ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = -3
Query:   16 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 267
            ++++G P   G+S  ++KR++I  E++ NPS++ +DEPTSGLD                 GRTVV TIHQPS  I+  FD+V+L
Sbjct:  193 NSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAHRIVTTIKRLASGGRTVVTTIHQPSSRIYHMFDKVVL 276          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCG2_MACMU (ATP-binding cassette sub-family G member 2 OS=Macaca mulatta GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.362e-12
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = -3
Query:   16 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 267
            D+ VG   + G+S  +RKR +I +EL+ +PSI+F+DEPT+GLD                 GRT++ +IHQP   IF+ FD + L
Sbjct:  175 DSKVGTQFIRGVSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTL 258          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCG2_HUMAN (ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 2.362e-12
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = -3
Query:   16 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 267
            D+ VG   + G+S  +RKR +I +EL+ +PSI+F+DEPT+GLD                 GRT++ +IHQP   IF+ FD + L
Sbjct:  175 DSKVGTQFIRGVSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTL 258          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB15G_ARATH (ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.085e-12
Identity = 33/84 (39.29%), Postives = 51/84 (60.71%), Query Frame = -3
Query:   16 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 267
            D ++G     G+S  +RKR++IA+E++  P I+F+DEPTSGLD                 GRTV+ ++HQPS ++F  FD++ L
Sbjct:  158 DRVIGNWHARGVSGGERKRVSIALEILTRPQILFLDEPTSGLDSASAFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDLFL 241          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: WHT1_CAEEL (ABC transporter ATP-binding protein/permease wht-1 OS=Caenorhabditis elegans GN=wht-1 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.029e-12
Identity = 36/89 (40.45%), Postives = 50/89 (56.18%), Query Frame = -3
Query:   16 KPLRDALVGLPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 279
            K   D ++G+P  + GLS  ++KRL+ A E++  P I+F DEPTSGLD               D G TV+ TIHQPS  ++  F+ V L
Sbjct:  121 KKCADTVIGIPNQLKGLSCGEKKRLSFASEILTCPKILFCDEPTSGLDAFMAGHVVQALRSLADNGMTVIITIHQPSSHVYSLFNNVCL 209          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCG2_RAT (ATP-binding cassette sub-family G member 2 OS=Rattus norvegicus GN=Abcg2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.029e-12
Identity = 34/84 (40.48%), Postives = 49/84 (58.33%), Query Frame = -3
Query:   16 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 267
            D+ VG     G+S  +RKR +I +EL+ +PSI+F+DEPT+GLD                 GRT++ +IHQP   IF+ FD + L
Sbjct:  174 DSKVGTQFTRGISGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTL 257          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB26G_ARATH (ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.029e-12
Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = -3
Query:   16 RDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 270
            R   VG   V G+S  +RKR +IA E++ +PS++ +DEPTSGLD                 GRTV+ TIHQPS  +F  FD++LL
Sbjct:  225 RRTRVGGGFVKGISGGERKRASIAYEILVDPSLLLLDEPTSGLDSTSATKLLHILQGVAKAGRTVITTIHQPSSRMFHMFDKLLL 309          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB11G_ARATH (ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.261e-12
Identity = 32/84 (38.10%), Postives = 52/84 (61.90%), Query Frame = -3
Query:   16 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 267
            D ++G   + G+S  +++R++IA+E++  P ++F+DEPTSGLD                 GRTV+ +IHQPS ++FE FD + L
Sbjct:  182 DTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALSRDGRTVIASIHQPSSEVFELFDRLYL 265          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: WHT3_CAEEL (ABC transporter ATP-binding protein/permease wht-3 OS=Caenorhabditis elegans GN=wht-3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.975e-12
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = -3
Query:   19 RDALVGLPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVL 270
            RD  +G PG V G+S  + +RLT A EL++NPS++F DEPTSGLD               ++GRT+   IHQP+ ++F  FD+++
Sbjct:  167 RDLKIGTPGLVKGISGGEARRLTFACELLSNPSLLFADEPTSGLDSFMAASVVQILKNLANSGRTL---IHQPTAELFFQFDKII 248          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: WHITE_ANOGA (Protein white OS=Anopheles gambiae GN=w PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.975e-12
Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = -3
Query:   16 DALVGLPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 267
            D ++G PG + GLS  +RKRL  A E + +P ++  DEPTSGLD                 G+T++ TIHQPS +++  FD++LL
Sbjct:  232 DTIIGAPGRIKGLSGGERKRLAFASETLTDPHLLLCDEPTSGLDSFMAHSVLQVLKGMAMKGKTIILTIHQPSSELYCLFDKILL 316          
The following BLAST results are available for this feature:
BLAST of GH733308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
AB14G_ARATH1.808e-1241.67ABC transporter G family member 14 OS=Arabidopsis ... [more]
ABCG2_MACMU2.362e-1240.48ATP-binding cassette sub-family G member 2 OS=Maca... [more]
ABCG2_HUMAN2.362e-1240.48ATP-binding cassette sub-family G member 2 OS=Homo... [more]
AB15G_ARATH3.085e-1239.29ABC transporter G family member 15 OS=Arabidopsis ... [more]
WHT1_CAEEL4.029e-1240.45ABC transporter ATP-binding protein/permease wht-1... [more]
ABCG2_RAT4.029e-1240.48ATP-binding cassette sub-family G member 2 OS=Ratt... [more]
AB26G_ARATH4.029e-1243.53ABC transporter G family member 26 OS=Arabidopsis ... [more]
AB11G_ARATH5.261e-1238.10ABC transporter G family member 11 OS=Arabidopsis ... [more]
WHT3_CAEEL8.975e-1242.35ABC transporter ATP-binding protein/permease wht-3... [more]
WHITE_ANOGA8.975e-1240.00Protein white OS=Anopheles gambiae GN=w PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionU_108 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733308 ID=GH733308; Name=GH733308; organism=Citrus clementina; type=EST; length=293bp
GACTGCGTACCAATTCAGCAATACCTCATCAAATGCTTCAAAAATGTCTA
TGCTTGGCTGATGAATTGTGCACACAACCGTTCTCCCTGTATCCACTGTA
TTTCTAACCGTACGCACGACAATAGCAGCTGCTCTAGCATCAAGGCCAGA
TGTTGGCTCGTCCATGAAGATGATTGAAGGGTTAGCAACCAATTCTACAG
CAATTGTCAATCTCTTCCTTTGCTCTGTTGAAAGACCATTTACTCCTGGA
AGGCCAACCAAAGCATCCCTCAATGGTTTACTCAGGACTCATC
back to top