GH733308

Overview
NameGH733308
Unique NameGH733308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14610 contig Ccv1_Contig14610:404..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB21G_ARATH (ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.975e-12
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = -3
Query:   16 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 267
            ++++G   + G+S  +RKR++I  E++ NPS++ +DEPTSGLD                 GRTVV TIHQPS  ++  FD+VL+
Sbjct:  211 NSVIGGGLIRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAARIVATLRSLARGGRTVVTTIHQPSSRLYRMFDKVLV 294          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: SCRT_DROME (Protein scarlet OS=Drosophila melanogaster GN=st PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.172e-11
Identity = 34/73 (46.58%), Postives = 44/73 (60.27%), Query Frame = -3
Query:   16 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 234
            LS  +RKRL  AVEL+ NP I+F DEPT+GLD                 G T++CTIHQPS  +F+ F+ V+L
Sbjct:  216 LSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQKGTTILCTIHQPSSQLFDNFNNVML 288          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCGO_DICDI (ABC transporter G family member 24 OS=Dictyostelium discoideum GN=abcG24 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.531e-11
Identity = 35/88 (39.77%), Postives = 52/88 (59.09%), Query Frame = -3
Query:   16 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTG----RTVVCTIHQPSIDIFEAFDEVLL 267
            D  +G     G+S  +R+RL+IA EL+ +PSI+F+DEPTSGLD               +      RT++ +IHQPS ++FE FD ++L
Sbjct:  592 DNPIGTSEKRGISGGERRRLSIATELIVDPSILFIDEPTSGLDSHSASELITKLKQLANNSTKGQRTIIFSIHQPSAELFEQFDNLIL 679          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB12G_ARATH (ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.531e-11
Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = -3
Query:   16 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-XXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 267
            D ++G     G+S  +RKR+++A+E++  P I+F+DEPTSGLD                D GRTVV +IHQPS ++F  FD++ L
Sbjct:  157 DRVIGNWHSRGVSGGERKRVSVALEILTRPQILFLDEPTSGLDSASAFFVIQALRNIARDGGRTVVSSIHQPSSEVFALFDDLFL 241          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB9G_ARATH (ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.999e-11
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = -3
Query:   52 RDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPS 270
            +D ++G P + G+S  +RKR++I  E++ NPS++F+DEPTSGLD                 GRTVV TIHQPS
Sbjct:  180 KDTIIGGPFLRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTTAQRIVSILWELARGGRTVVTTIHQPS 252          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB25G_ARATH (ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.611e-11
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = -3
Query:   16 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-XXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 267
            + +VG   + G+S  +RKR++IA EL+ NPS++ +DEPTSGLD                  G+TVV +IHQPS  +F+ FD VLL
Sbjct:  196 NTVVGNTFIRGISGGERKRVSIAHELLINPSLLVLDEPTSGLDATAALRLVQTLAGLAHGKGKTVVTSIHQPSSRVFQMFDTVLL 280          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB27G_ARATH (ABC transporter G family member 27 OS=Arabidopsis thaliana GN=ABCG27 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.410e-11
Identity = 32/85 (37.65%), Postives = 50/85 (58.82%), Query Frame = -3
Query:   16 RDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 270
            +D ++G   V G+S  +RKR+ I  E++ NPS++ +DEPTS LD                 G+T+V TIHQPS  +F  FD++++
Sbjct:  279 QDTMIGGSFVRGVSGGERKRVCIGNEIMTNPSLLLLDEPTSSLDSTTALKIVQMLHCIAKAGKTIVTTIHQPSSRLFHRFDKLVV 363          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCGC_DICDI (ABC transporter G family member 12 OS=Dictyostelium discoideum GN=abcG12 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.817e-11
Identity = 35/82 (42.68%), Postives = 50/82 (60.98%), Query Frame = -3
Query:   16 LPG---VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 252
            LPG   + GLS  +++R++I   LV NPS+IF+DEPTSGLD                 G TV+C+IHQP  +IF  F++V++
Sbjct:  192 LPGGILMKGLSGGEKRRVSIGCGLVTNPSLIFLDEPTSGLDSVAALQIMKTLLNLTLKGVTVICSIHQPRPEIFALFNKVMV 273          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCG8_DICDI (ABC transporter G family member 8 OS=Dictyostelium discoideum GN=abcG8 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.817e-11
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = -3
Query:   16 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 261
            L G   V GLS  +++R++I   L+ NPS+IF+DEPTSGLD                 G TV+C+IHQP  +IF+  ++V++
Sbjct:  191 LAGGVAVTGLSGGEKRRVSIGCGLITNPSLIFLDEPTSGLDSVAALQIMKTLLNLTLKGVTVICSIHQPRPEIFQLINKVMV 272          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB28G_ARATH (ABC transporter G family member 28 OS=Arabidopsis thaliana GN=ABCG28 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.817e-11
Identity = 32/86 (37.21%), Postives = 48/86 (55.81%), Query Frame = -3
Query:   16 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 273
            +RD+LVG     G+S  QRKR+ + +E+V  PS++ +DEPTSGLD                 G  +   +HQPS  +F  FD+++L
Sbjct:  627 VRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVVHQPSYTLFRMFDDLIL 712          
The following BLAST results are available for this feature:
BLAST of GH733308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
AB21G_ARATH8.975e-1240.48ABC transporter G family member 21 OS=Arabidopsis ... [more]
SCRT_DROME1.172e-1146.58Protein scarlet OS=Drosophila melanogaster GN=st P... [more]
ABCGO_DICDI1.531e-1139.77ABC transporter G family member 24 OS=Dictyosteliu... [more]
AB12G_ARATH1.531e-1141.18ABC transporter G family member 12 OS=Arabidopsis ... [more]
AB9G_ARATH1.999e-1145.21ABC transporter G family member 9 OS=Arabidopsis t... [more]
AB25G_ARATH2.611e-1143.53ABC transporter G family member 25 OS=Arabidopsis ... [more]
AB27G_ARATH3.410e-1137.65ABC transporter G family member 27 OS=Arabidopsis ... [more]
ABCGC_DICDI5.817e-1142.68ABC transporter G family member 12 OS=Dictyosteliu... [more]
ABCG8_DICDI5.817e-1140.24ABC transporter G family member 8 OS=Dictyostelium... [more]
AB28G_ARATH5.817e-1137.21ABC transporter G family member 28 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionU_108 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733308 ID=GH733308; Name=GH733308; organism=Citrus clementina; type=EST; length=293bp
GACTGCGTACCAATTCAGCAATACCTCATCAAATGCTTCAAAAATGTCTA
TGCTTGGCTGATGAATTGTGCACACAACCGTTCTCCCTGTATCCACTGTA
TTTCTAACCGTACGCACGACAATAGCAGCTGCTCTAGCATCAAGGCCAGA
TGTTGGCTCGTCCATGAAGATGATTGAAGGGTTAGCAACCAATTCTACAG
CAATTGTCAATCTCTTCCTTTGCTCTGTTGAAAGACCATTTACTCCTGGA
AGGCCAACCAAAGCATCCCTCAATGGTTTACTCAGGACTCATC
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