BG732219

Overview
NameBG732219
Unique NameBG732219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length215
Libraries
Library NameType
Citrus sinensis flavedo cellscdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: TNNC1_PIG (Troponin C, slow skeletal and cardiac muscles OS=Sus scrofa GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.337e-19
Identity = 47/71 (66.20%), Postives = 55/71 (77.46%), Query Frame = 2
Query:   11 DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRV 214
            DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+
Sbjct:   33 DGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRM 103          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: TNNC1_MOUSE (Troponin C, slow skeletal and cardiac muscles OS=Mus musculus GN=Tnnc1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.337e-19
Identity = 47/71 (66.20%), Postives = 55/71 (77.46%), Query Frame = 2
Query:   11 DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRV 214
            DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+
Sbjct:   33 DGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRM 103          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: TNNC1_HUMAN (Troponin C, slow skeletal and cardiac muscles OS=Homo sapiens GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.337e-19
Identity = 47/71 (66.20%), Postives = 55/71 (77.46%), Query Frame = 2
Query:   11 DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRV 214
            DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+
Sbjct:   33 DGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRM 103          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: TNNC1_BOVIN (Troponin C, slow skeletal and cardiac muscles OS=Bos taurus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.337e-19
Identity = 47/71 (66.20%), Postives = 55/71 (77.46%), Query Frame = 2
Query:   11 DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRV 214
            DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+
Sbjct:   33 DGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRM 103          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: TNNC1_CHICK (Troponin C, slow skeletal and cardiac muscles OS=Gallus gallus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.661e-19
Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = 2
Query:   11 DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRV 214
            DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     +EEEL + FR+
Sbjct:   33 DGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKTEEELSDLFRM 103          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: TNNC1_COTJA (Troponin C, slow skeletal and cardiac muscles OS=Coturnix coturnix japonica GN=TNNC1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.152e-18
Identity = 45/71 (63.38%), Postives = 55/71 (77.46%), Query Frame = 2
Query:   11 DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRV 214
            DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF +FL +M R MKD     +EEEL + FR+
Sbjct:   33 DGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDQFLVMMVRCMKDDSKGKTEEELSDLFRM 103          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: CALM_YEAST (Calmodulin OS=Saccharomyces cerevisiae GN=CMD1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.811e-18
Identity = 42/71 (59.15%), Postives = 57/71 (80.28%), Query Frame = 2
Query:    2 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRV 214
            KD +G I++ EL TVMRSLG +P+EAE+ D++NE+D DGN  I+F EFL LM+R++K  DSE+EL EAF+V
Sbjct:   22 KDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSRQLKSNDSEQELLEAFKV 92          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: CML5_ORYSJ (Calmodulin-like protein 5 OS=Oryza sativa subsp. japonica GN=CML5 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.178e-18
Identity = 47/83 (56.63%), Postives = 56/83 (67.47%), Query Frame = 2
Query:    2 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKM------------KDTDSEEELKEAFRV 214
            KDGDGCIT +EL TV+RSLGQ PT  EL +MI +VD DGNGTI+F EFL LMARK                 ++EEL+EAF+V
Sbjct:   25 KDGDGCITLEELDTVVRSLGQTPTREELAEMIRDVDVDGNGTIEFAEFLALMARKASRGGENGGGGDDSGDAADEELREAFKV 107          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: TNNC2_ANGAN (Troponin C, skeletal muscle OS=Anguilla anguilla PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.068e-17
Identity = 47/73 (64.38%), Postives = 54/73 (73.97%), Query Frame = 2
Query:    5 DGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRV 214
            DG G I+TKELGTVMR LGQNPT  EL  +I EVD DG+GTIDF EFL +M R++K+     SEEEL E FRV
Sbjct:   30 DGGGDISTKELGTVMRMLGQNPTREELDAIIEEVDEDGSGTIDFEEFLVMMVRQLKEDQAGKSEEELAEFFRV 102          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: CALM_KLULA (Calmodulin OS=Kluyveromyces lactis GN=CMD1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.068e-17
Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 2
Query:    2 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRV 214
            KD  G I+  EL TVMRSLG +P+EAE+ D++NE+D DGN  I+F EFL LM+R++K  DSE+EL EAF+V
Sbjct:   22 KDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQLKCNDSEQELLEAFKV 92          
The following BLAST results are available for this feature:
BLAST of BG732219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
TNNC1_PIG4.337e-1966.20Troponin C, slow skeletal and cardiac muscles OS=S... [more]
TNNC1_MOUSE4.337e-1966.20Troponin C, slow skeletal and cardiac muscles OS=M... [more]
TNNC1_HUMAN4.337e-1966.20Troponin C, slow skeletal and cardiac muscles OS=H... [more]
TNNC1_BOVIN4.337e-1966.20Troponin C, slow skeletal and cardiac muscles OS=B... [more]
TNNC1_CHICK9.661e-1964.79Troponin C, slow skeletal and cardiac muscles OS=G... [more]
TNNC1_COTJA2.152e-1863.38Troponin C, slow skeletal and cardiac muscles OS=C... [more]
CALM_YEAST2.811e-1859.15Calmodulin OS=Saccharomyces cerevisiae GN=CMD1 PE=... [more]
CML5_ORYSJ8.178e-1856.63Calmodulin-like protein 5 OS=Oryza sativa subsp. j... [more]
TNNC2_ANGAN1.068e-1764.38Troponin C, skeletal muscle OS=Anguilla anguilla P... [more]
CALM_KLULA1.068e-1759.15Calmodulin OS=Kluyveromyces lactis GN=CMD1 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionCs-12d Citrus sinensis flavedo cells Citrus sinensis cDNA clone Cs-12d similar to Calmodulin, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BG732219 ID=BG732219; Name=BG732219; organism=Citrus sinensis; type=EST; length=215bp
GAAGGACGGCGACGGTTGCATTACCACCAAGGAGCTTGGCACTGTTATGA
GGTCACTGGGTCAGAACCCCACTGAGGCTGAGCTCCAGGACATGATCAAT
GAAGTGGATGCTGATGGTAATGGAACTATTGATTTTCCTGAATTCCTAAA
CCTCATGGCCAGGAAGATGAAGGATACCGACTCTGAGGAGGAGCTGAAAG
AGGCCTTCCGGGTTT
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