BG732219

Overview
NameBG732219
Unique NameBG732219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length215
Libraries
Library NameType
Citrus sinensis flavedo cellscdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: TNNC2_MELGA (Troponin C, skeletal muscle OS=Meleagris gallopavo GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.395e-17
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 2
Query:    5 DGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRV 214
            DG G I+TKELGTVMR LGQNPT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL   FR+
Sbjct:   32 DGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRI 104          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: TNNC2_CHICK (Troponin C, skeletal muscle OS=Gallus gallus GN=TNNC2 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.395e-17
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 2
Query:    5 DGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRV 214
            DG G I+TKELGTVMR LGQNPT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL   FR+
Sbjct:   33 DGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRI 105          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: TNNC2_RANES (Troponin C, skeletal muscle OS=Rana esculenta PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.822e-17
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 2
Query:    5 DGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRV 214
            DG G I+TKELGTVMR LGQ PT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL E FR+
Sbjct:   32 DGGGDISTKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAQGKSEEELAECFRI 104          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: TNNC2_RABIT (Troponin C, skeletal muscle OS=Oryctolagus cuniculus GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.923e-17
Identity = 45/73 (61.64%), Postives = 53/73 (72.60%), Query Frame = 2
Query:    5 DGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRV 214
            DG G I+ KELGTVMR LGQ PT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL E FR+
Sbjct:   30 DGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRI 102          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: TNNC2_PIG (Troponin C, skeletal muscle OS=Sus scrofa GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.923e-17
Identity = 45/73 (61.64%), Postives = 53/73 (72.60%), Query Frame = 2
Query:    5 DGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRV 214
            DG G I+ KELGTVMR LGQ PT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL E FR+
Sbjct:   29 DGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRI 101          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: TNNC2_MOUSE (Troponin C, skeletal muscle OS=Mus musculus GN=Tnnc2 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.923e-17
Identity = 45/73 (61.64%), Postives = 53/73 (72.60%), Query Frame = 2
Query:    5 DGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRV 214
            DG G I+ KELGTVMR LGQ PT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL E FR+
Sbjct:   30 DGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRI 102          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: TNNC2_HUMAN (Troponin C, skeletal muscle OS=Homo sapiens GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.923e-17
Identity = 45/73 (61.64%), Postives = 53/73 (72.60%), Query Frame = 2
Query:    5 DGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRV 214
            DG G I+ KELGTVMR LGQ PT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL E FR+
Sbjct:   30 DGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRI 102          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: CALML_DICDI (Calmodulin-like protein OS=Dictyostelium discoideum GN=calB PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.181e-16
Identity = 41/71 (57.75%), Postives = 56/71 (78.87%), Query Frame = 2
Query:    2 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRV 214
            KD DG IT +ELG VMRS+G NPT+ EL+D+  E+D DG+G +DF +F +LM RKMK +DSE ++K+AF+V
Sbjct:   20 KDKDGKITIQELGIVMRSVGSNPTQQELKDIAKEID-DGSGLVDFSKFSSLMTRKMKYSDSEADIKQAFKV 89          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: CML12_ARATH (Calmodulin-like protein 12 OS=Arabidopsis thaliana GN=CML12 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 2.631e-16
Identity = 38/67 (56.72%), Postives = 51/67 (76.12%), Query Frame = 2
Query:    2 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKE 202
            K+GDG IT KELGT+MRS+G+ PT+A+LQD++NE D DG+GTIDFPEFL +MA+      +    K+
Sbjct:   22 KNGDGSITKKELGTMMRSIGEKPTKADLQDLMNEADLDGDGTIDFPEFLCVMAKNQGHDQAPRHTKK 88          

HSP 2 Score: 83.5741 bits (205), Expect = 3.436e-16
Identity = 44/71 (61.97%), Postives = 52/71 (73.24%), Query Frame = 2
Query:    2 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRV 214
            K+GDG IT  EL T MRSLG+  T+AELQDMINE DADG+GTI F EF+ +M  KM DT S+   KE +RV
Sbjct:  201 KNGDGYITVNELRTTMRSLGETQTKAELQDMINEADADGDGTISFSEFVCVMTGKMIDTQSK---KETYRV 268          

HSP 3 Score: 82.8037 bits (203), Expect = 5.861e-16
Identity = 50/88 (56.82%), Postives = 57/88 (64.77%), Query Frame = 2
Query:    2 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA---------RKMKDT--------DSEEELKEAFRV 214
            K+GDG IT KEL TVM SLG+N T+A+LQDM+NEVD DG+GTIDFPEFL LMA         R  K T        D   E +EAFRV
Sbjct:  111 KNGDGSITKKELRTVMFSLGKNRTKADLQDMMNEVDLDGDGTIDFPEFLYLMAKNQGHDQAPRHTKKTMVDYQLTDDQILEFREAFRV 198          
BLAST of BG732219 vs. ExPASy Swiss-Prot
Match: TNNC_BRALA (Troponin C OS=Branchiostoma lanceolatum PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.488e-16
Identity = 42/74 (56.76%), Postives = 56/74 (75.68%), Query Frame = 2
Query:    2 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSE---EELKEAFRV 214
            +DG G I+TKELGT+M+ LG + +  ELQ MI+EVD D +GTIDF EFL +MAR M+D++ E   +EL+ AFRV
Sbjct:   28 EDGGGDISTKELGTIMKRLGMSISREELQQMIDEVDEDASGTIDFEEFLEMMARAMQDSEREIPDDELRAAFRV 101          
The following BLAST results are available for this feature:
BLAST of BG732219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
TNNC2_MELGA1.395e-1763.01Troponin C, skeletal muscle OS=Meleagris gallopavo... [more]
TNNC2_CHICK1.395e-1763.01Troponin C, skeletal muscle OS=Gallus gallus GN=TN... [more]
TNNC2_RANES1.822e-1763.01Troponin C, skeletal muscle OS=Rana esculenta PE=1... [more]
TNNC2_RABIT6.923e-1761.64Troponin C, skeletal muscle OS=Oryctolagus cunicul... [more]
TNNC2_PIG6.923e-1761.64Troponin C, skeletal muscle OS=Sus scrofa GN=TNNC2... [more]
TNNC2_MOUSE6.923e-1761.64Troponin C, skeletal muscle OS=Mus musculus GN=Tnn... [more]
TNNC2_HUMAN6.923e-1761.64Troponin C, skeletal muscle OS=Homo sapiens GN=TNN... [more]
CALML_DICDI1.181e-1657.75Calmodulin-like protein OS=Dictyostelium discoideu... [more]
CML12_ARATH2.631e-1656.72Calmodulin-like protein 12 OS=Arabidopsis thaliana... [more]
TNNC_BRALA4.488e-1656.76Troponin C OS=Branchiostoma lanceolatum PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCs-12d Citrus sinensis flavedo cells Citrus sinensis cDNA clone Cs-12d similar to Calmodulin, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BG732219 ID=BG732219; Name=BG732219; organism=Citrus sinensis; type=EST; length=215bp
GAAGGACGGCGACGGTTGCATTACCACCAAGGAGCTTGGCACTGTTATGA
GGTCACTGGGTCAGAACCCCACTGAGGCTGAGCTCCAGGACATGATCAAT
GAAGTGGATGCTGATGGTAATGGAACTATTGATTTTCCTGAATTCCTAAA
CCTCATGGCCAGGAAGATGAAGGATACCGACTCTGAGGAGGAGCTGAAAG
AGGCCTTCCGGGTTT
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