BG733610

Overview
NameBG733610
Unique NameBG733610
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length154
Libraries
Library NameType
Citrus sinensis flavedo cellscdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_RHOP5 (ATP synthase subunit alpha OS=Rhodopseudomonas palustris (strain BisA53) GN=atpA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.889e-19
Identity = 43/51 (84.31%), Postives = 49/51 (96.08%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            +VKAPGII RKSVHEPM TGLK++D+L+PIGRGQRELIIGDRQTGKTAIA+
Sbjct:  130 DVKAPGIIPRKSVHEPMATGLKSIDALIPIGRGQRELIIGDRQTGKTAIAL 180          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_PELUB (ATP synthase subunit alpha OS=Pelagibacter ubique GN=atpA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.889e-19
Identity = 44/51 (86.27%), Postives = 49/51 (96.08%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            EVKAPGII R+SV EPMQTGLK++DSLVP+GRGQRELIIGDRQTGKTA+AI
Sbjct:  131 EVKAPGIIPRQSVSEPMQTGLKSIDSLVPVGRGQRELIIGDRQTGKTAVAI 181          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_RICTY (ATP synthase subunit alpha OS=Rickettsia typhi GN=atpA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.292e-18
Identity = 44/51 (86.27%), Postives = 49/51 (96.08%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            E+KAPGIIER SV EP+QTG+KA+DSL+PIGRGQRELIIGDRQTGKTAIAI
Sbjct:  130 EMKAPGIIERTSVSEPVQTGIKAIDSLIPIGRGQRELIIGDRQTGKTAIAI 180          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_RHOCA (ATP synthase subunit alpha OS=Rhodobacter capsulatus GN=atpA PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 1.292e-18
Identity = 43/51 (84.31%), Postives = 49/51 (96.08%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            +VKAPGII RKSVHEPM TGLK+VD+++PIGRGQRELIIGDRQTGKTAIA+
Sbjct:  130 DVKAPGIIPRKSVHEPMATGLKSVDAMIPIGRGQRELIIGDRQTGKTAIAL 180          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_PELPB (ATP synthase subunit alpha OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=atpA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.292e-18
Identity = 42/51 (82.35%), Postives = 49/51 (96.08%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            E +APG+I RKSVHEP+QTGLKA+DS++PIGRGQRELIIGDRQTGKTA+AI
Sbjct:  132 ERRAPGVIYRKSVHEPLQTGLKAIDSMIPIGRGQRELIIGDRQTGKTAVAI 182          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_MESSB (ATP synthase subunit alpha OS=Mesorhizobium sp. (strain BNC1) GN=atpA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.292e-18
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            +VKAPGII RKSVHEPM TGLKA+D+L+PIGRGQRELIIGDRQTGKTAI +
Sbjct:  130 DVKAPGIIPRKSVHEPMSTGLKAIDALIPIGRGQRELIIGDRQTGKTAIIL 180          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_GRABC (ATP synthase subunit alpha OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=atpA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.292e-18
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            EVKAPGII RKSVHEPMQTGLK+VD+L+PIGRGQREL+IGDRQTGKT + +
Sbjct:  131 EVKAPGIIPRKSVHEPMQTGLKSVDALIPIGRGQRELVIGDRQTGKTTVIL 181          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_CLAMS (ATP synthase subunit alpha OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=atpA PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.292e-18
Identity = 40/51 (78.43%), Postives = 51/51 (100.00%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            E++APG+++RKSVHEPMQTG+KA+D+++PIGRGQR+LIIGDRQTGKTAIAI
Sbjct:  134 ELQAPGVMQRKSVHEPMQTGIKAIDAMIPIGRGQRQLIIGDRQTGKTAIAI 184          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_CLAM3 (ATP synthase subunit alpha OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=atpA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.292e-18
Identity = 40/51 (78.43%), Postives = 51/51 (100.00%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            E++APG+++RKSVHEPMQTG+KA+D+++PIGRGQR+LIIGDRQTGKTAIAI
Sbjct:  134 ELQAPGVMQRKSVHEPMQTGIKAIDAMIPIGRGQRQLIIGDRQTGKTAIAI 184          
BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPA_CHLPD (ATP synthase subunit alpha OS=Chlorobium phaeobacteroides (strain DSM 266) GN=atpA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.292e-18
Identity = 42/51 (82.35%), Postives = 49/51 (96.08%), Query Frame = 2
Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            E +APG+I RKSVHEP+QTGLKA+DS++PIGRGQRELIIGDRQTGKTA+AI
Sbjct:  132 ERRAPGVIYRKSVHEPLQTGLKAIDSMIPIGRGQRELIIGDRQTGKTAVAI 182          
The following BLAST results are available for this feature:
BLAST of BG733610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_RHOP59.889e-1984.31ATP synthase subunit alpha OS=Rhodopseudomonas pal... [more]
ATPA_PELUB9.889e-1986.27ATP synthase subunit alpha OS=Pelagibacter ubique ... [more]
ATPA_RICTY1.292e-1886.27ATP synthase subunit alpha OS=Rickettsia typhi GN=... [more]
ATPA_RHOCA1.292e-1884.31ATP synthase subunit alpha OS=Rhodobacter capsulat... [more]
ATPA_PELPB1.292e-1882.35ATP synthase subunit alpha OS=Pelodictyon phaeocla... [more]
ATPA_MESSB1.292e-1884.31ATP synthase subunit alpha OS=Mesorhizobium sp. (s... [more]
ATPA_GRABC1.292e-1882.35ATP synthase subunit alpha OS=Granulibacter bethes... [more]
ATPA_CLAMS1.292e-1878.43ATP synthase subunit alpha OS=Clavibacter michigan... [more]
ATPA_CLAM31.292e-1878.43ATP synthase subunit alpha OS=Clavibacter michigan... [more]
ATPA_CHLPD1.292e-1882.35ATP synthase subunit alpha OS=Chlorobium phaeobact... [more]

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Properties
Property NameValue
Genbank descriptionCs-24b Citrus sinensis flavedo cells Citrus sinensis cDNA clone Cs-24b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BG733610 ID=BG733610; Name=BG733610; organism=Citrus sinensis; type=EST; length=154bp
CGAAGTGAAAGCCCCAGGGATTATTGAACGTAAATCTGTGCACGAGCCCA
TGCAAACGGGCTTAAAAGCGGTAGATAGTCTCGTTCCTATAGGCCGTGGT
CAACGAGAACTTATAATCGGGGACCGACAAACTGGAAAAACTGCTATTGC
TATC
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