BG791315

Overview
NameBG791315
Unique NameBG791315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length226
Libraries
Library NameType
Citrus sinensis flavedo cellscdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10367 contig Csv1_Contig10367:586..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BG791315 vs. ExPASy Swiss-Prot
Match: C1TM_YEAST (C-1-tetrahydrofolate synthase, mitochondrial OS=Saccharomyces cerevisiae GN=MIS1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.423e-18
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 2
Query:    2 EMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDV 226
            + Y  QGF  LPIC+AKTQYS SH+ + KG P GF  PIRDVRASIGAG++Y L   + T+PGL T   +  ++V
Sbjct:  891 DTYKKQGFGNLPICIAKTQYSLSHDPSLKGVPRGFTFPIRDVRASIGAGYLYALAAEIQTIPGLSTYAGYMAVEV 965          
BLAST of BG791315 vs. ExPASy Swiss-Prot
Match: FTHS_CHLSY (Formate--tetrahydrofolate ligase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=fhs PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.096e-17
Identity = 41/69 (59.42%), Postives = 48/69 (69.57%), Query Frame = 2
Query:   20 GFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDV 226
            GF  LPICMAKT  S SH+ A +GAP GF  PIR+VR S GAGFI P+ GT  TMPGL   P  ++ID+
Sbjct:  494 GFGNLPICMAKTHLSLSHDPALRGAPEGFTFPIREVRLSAGAGFILPIAGTTVTMPGLGAHPAAHQIDI 562          
BLAST of BG791315 vs. ExPASy Swiss-Prot
Match: FTHS_CHLAA (Formate--tetrahydrofolate ligase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=fhs PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.096e-17
Identity = 41/69 (59.42%), Postives = 48/69 (69.57%), Query Frame = 2
Query:   20 GFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDV 226
            GF  LPICMAKT  S SH+ A +GAP GF  PIR+VR S GAGFI P+ GT  TMPGL   P  ++ID+
Sbjct:  494 GFGNLPICMAKTHLSLSHDPALRGAPEGFTFPIREVRLSAGAGFILPIAGTTVTMPGLGAHPAAHQIDI 562          
BLAST of BG791315 vs. ExPASy Swiss-Prot
Match: FTHS_JANSC (Formate--tetrahydrofolate ligase OS=Jannaschia sp. (strain CCS1) GN=fhs PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.431e-17
Identity = 38/68 (55.88%), Postives = 52/68 (76.47%), Query Frame = 2
Query:    2 EMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRP 205
            +++  QG+  LP+CMAKTQYSF+ +  E+GAPTGF +P+R+VR S GAGFI  + G + TMPGLP +P
Sbjct:  474 KLWEDQGYGKLPVCMAKTQYSFTTDPNERGAPTGFTIPVREVRLSAGAGFIVAVCGEIMTMPGLPRKP 541          
BLAST of BG791315 vs. ExPASy Swiss-Prot
Match: FTHS_CHLAD (Formate--tetrahydrofolate ligase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=fhs PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.869e-17
Identity = 40/72 (55.56%), Postives = 48/72 (66.67%), Query Frame = 2
Query:   11 TGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDV 226
            T  GF  LPICM KT  S SH+   +GAP GFI PIR+VR S GAGFI P+ GT  TMPGL   P  +++D+
Sbjct:  491 TEAGFGNLPICMVKTHLSLSHDPKLRGAPAGFIFPIREVRISAGAGFILPIAGTTVTMPGLGAHPAAHQVDI 562          
BLAST of BG791315 vs. ExPASy Swiss-Prot
Match: FTHS_ACICJ (Formate--tetrahydrofolate ligase OS=Acidiphilium cryptum (strain JF-5) GN=fhs PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.101e-17
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 2
Query:    8 YTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRP 205
            +  QG+  LP+C+AKTQYSF+ + A +GAPTGF +PIRD R S GAGF+  L G + TMPGLP  P
Sbjct:  475 FEAQGYDHLPVCVAKTQYSFTADPARRGAPTGFTVPIRDARLSAGAGFVVALAGDVMTMPGLPRIP 540          
BLAST of BG791315 vs. ExPASy Swiss-Prot
Match: FTHS_SACEN (Formate--tetrahydrofolate ligase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=fhs PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.211e-16
Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 2
Query:    8 YTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDV 226
            Y   GF  LP+C+AKT  S S + +  GAPTG+ LP+R+VRASIGAGFIY + G M TMPGL + P    ID+
Sbjct:  483 YEAIGFGSLPVCIAKTHLSLSSDPSLLGAPTGWTLPVREVRASIGAGFIYAICGEMRTMPGLGSHPAAERIDI 555          
BLAST of BG791315 vs. ExPASy Swiss-Prot
Match: FTHS_DINSH (Formate--tetrahydrofolate ligase OS=Dinoroseobacter shibae (strain DFL 12) GN=fhs PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.698e-16
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 2
Query:    2 EMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRP 205
            +++  QG+  LPICMAKTQYSFS +  E+GAPTG  +P+R+VR S GAGF+  + G + TMPGLP  P
Sbjct:  471 KLWEEQGYGHLPICMAKTQYSFSTDPNERGAPTGHAIPVREVRLSAGAGFVVVVCGEIMTMPGLPRVP 538          
BLAST of BG791315 vs. ExPASy Swiss-Prot
Match: FTHS_RENSM (Formate--tetrahydrofolate ligase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=fhs PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.524e-16
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 2
Query:   11 TGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDV 226
            +  G+  LP+CMAKTQYSFS +A+  GAP+GF+L +RD+    GAGFI  L G + TMPGLP +P   ++DV
Sbjct:  483 SANGWDSLPVCMAKTQYSFSDDASLLGAPSGFVLHVRDLVPKTGAGFIVALTGAVMTMPGLPKQPAALKMDV 554          
BLAST of BG791315 vs. ExPASy Swiss-Prot
Match: FTHS3_RUBXD (Formate--tetrahydrofolate ligase 3 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=fhs3 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.524e-16
Identity = 40/75 (53.33%), Postives = 50/75 (66.67%), Query Frame = 2
Query:    2 EMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDV 226
            E +   GF  LP+C+AKT  S S + A KGAP G+ L +R+VRAS+GAGFIYP+ G M TMPGL   P    ID+
Sbjct:  489 EGFERAGFGRLPVCLAKTHLSLSSDPALKGAPRGWKLSVREVRASVGAGFIYPICGQMRTMPGLSAHPAAERIDL 563          
The following BLAST results are available for this feature:
BLAST of BG791315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
C1TM_YEAST6.423e-1854.67C-1-tetrahydrofolate synthase, mitochondrial OS=Sa... [more]
FTHS_CHLSY1.096e-1759.42Formate--tetrahydrofolate ligase OS=Chloroflexus a... [more]
FTHS_CHLAA1.096e-1759.42Formate--tetrahydrofolate ligase OS=Chloroflexus a... [more]
FTHS_JANSC1.431e-1755.88Formate--tetrahydrofolate ligase OS=Jannaschia sp.... [more]
FTHS_CHLAD1.869e-1755.56Formate--tetrahydrofolate ligase OS=Chloroflexus a... [more]
FTHS_ACICJ7.101e-1757.58Formate--tetrahydrofolate ligase OS=Acidiphilium c... [more]
FTHS_SACEN1.211e-1654.79Formate--tetrahydrofolate ligase OS=Saccharopolysp... [more]
FTHS_DINSH2.698e-1655.88Formate--tetrahydrofolate ligase OS=Dinoroseobacte... [more]
FTHS_RENSM3.524e-1652.78Formate--tetrahydrofolate ligase OS=Renibacterium ... [more]
FTHS3_RUBXD3.524e-1653.33Formate--tetrahydrofolate ligase 3 OS=Rubrobacter ... [more]

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Properties
Property NameValue
Genbank descriptionCs-31d Citrus sinensis flavedo cells Citrus sinensis cDNA clone Cs-31d, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BG791315 ID=BG791315; Name=BG791315; organism=Citrus sinensis; type=EST; length=226bp
CGAAATGTACACCGGGCAAGGGTTTTCTGGCTTACCAATTTGCATGGCAA
AAACCCAGTATTCATTTTCACACAATGCCGCCGAGAAGGGAGCCCCAACT
GGGTTTATCTTACCGATAAGGGATGTAAGAGCTAGCATTGGGGCTGGATT
CATTTATCCTTTGGTTGGAACAATGAGTACAATGCCAGGTCTCCCAACAA
GGCCATGCTTTTACGAGATTGATGTC
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