BG791315

Overview
NameBG791315
Unique NameBG791315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length226
Libraries
Library NameType
Citrus sinensis flavedo cellscdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10367 contig Csv1_Contig10367:586..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BG791315 vs. ExPASy Swiss-Prot
Match: FTHS_RHILO (Formate--tetrahydrofolate ligase OS=Rhizobium loti GN=fhs PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.681e-15
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 2
Query:   20 GFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRP 205
            G+  LP+CMAKTQYSFS +   +GAPTG  +P+R+VR S GAGF+  + G + TMPGLP  P
Sbjct:  481 GYGNLPVCMAKTQYSFSTDPNLRGAPTGHTVPVREVRLSAGAGFVVIICGEVMTMPGLPKAP 542          
BLAST of BG791315 vs. ExPASy Swiss-Prot
Match: FTHS_PROMH (Formate--tetrahydrofolate ligase OS=Proteus mirabilis (strain HI4320) GN=fhs PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.681e-15
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = 2
Query:   20 GFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDV 226
            GF   PICMAKTQYS S + A  G PT F + IR+V  S GAGF+  L GT++TMPGLP +P    +DV
Sbjct:  478 GFGHFPICMAKTQYSLSDDPALLGRPTDFTINIREVYVSAGAGFVVSLTGTINTMPGLPKKPAAMAMDV 546          
BLAST of BG791315 vs. ExPASy Swiss-Prot
Match: FTHS_MESSB (Formate--tetrahydrofolate ligase OS=Mesorhizobium sp. (strain BNC1) GN=fhs PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.681e-15
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 2
Query:    2 EMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRP 205
            + +  QG+  LP+CMAKTQYSFS ++  +GAP   ++P+R+VR S GAGF+  + G + TMPGLP  P
Sbjct:  475 KQWEDQGYGHLPVCMAKTQYSFSTDSNLRGAPVDHVVPVREVRLSAGAGFVVAICGEIMTMPGLPRAP 542          
BLAST of BG791315 vs. ExPASy Swiss-Prot
Match: FTHS2_STRPM (Formate--tetrahydrofolate ligase 2 OS=Streptococcus pyogenes serotype M28 GN=fhs2 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.681e-15
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = 2
Query:   20 GFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDV 226
            GF   PICMAKTQYSFS +A + GAPT F + I +++ S GAGFI  L G + TMPGLP  P    ID+
Sbjct:  479 GFGNYPICMAKTQYSFSDDAKKLGAPTDFTVTISNLKVSAGAGFIVALTGAIMTMPGLPKVPASETIDI 547          
BLAST of BG791315 vs. ExPASy Swiss-Prot
Match: FTHS2_STRPD (Formate--tetrahydrofolate ligase 2 OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=fhs2 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.681e-15
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = 2
Query:   20 GFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDV 226
            GF   PICMAKTQYSFS +A + GAPT F + I +++ S GAGFI  L G + TMPGLP  P    ID+
Sbjct:  479 GFGNYPICMAKTQYSFSDDAKKLGAPTDFTVTISNLKVSAGAGFIVALTGAIMTMPGLPKVPASETIDI 547          
BLAST of BG791315 vs. ExPASy Swiss-Prot
Match: FTHS2_STRP3 (Formate--tetrahydrofolate ligase 2 OS=Streptococcus pyogenes serotype M3 GN=fhs2 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.681e-15
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = 2
Query:   20 GFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDV 226
            GF   PICMAKTQYSFS +A + GAPT F + I +++ S GAGFI  L G + TMPGLP  P    ID+
Sbjct:  479 GFGNYPICMAKTQYSFSDDAKKLGAPTDFTVTISNLKVSAGAGFIVALTGAIMTMPGLPKVPASETIDI 547          
BLAST of BG791315 vs. ExPASy Swiss-Prot
Match: FTHS2_STRP1 (Formate--tetrahydrofolate ligase 2 OS=Streptococcus pyogenes serotype M1 GN=fhs2 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.681e-15
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = 2
Query:   20 GFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDV 226
            GF   PICMAKTQYSFS +A + GAPT F + I +++ S GAGFI  L G + TMPGLP  P    ID+
Sbjct:  479 GFGNYPICMAKTQYSFSDDAKKLGAPTDFTVTISNLKVSAGAGFIVALTGAIMTMPGLPKVPASETIDI 547          
BLAST of BG791315 vs. ExPASy Swiss-Prot
Match: FTHS_VIBCH (Formate--tetrahydrofolate ligase OS=Vibrio cholerae GN=fhs PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.134e-14
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 2
Query:   17 QGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDV 226
            QGF  L +C+AKT  S S + A KGAP  FI+PIR++R   GA F+Y L G++ TMPGLP +P F  +D+
Sbjct:  503 QGFDHLAVCLAKTPLSISTDPAIKGAPRDFIVPIRELRLCAGAEFVYALCGSVMTMPGLPEKPSFMALDI 572          
BLAST of BG791315 vs. ExPASy Swiss-Prot
Match: FTHS_STAAW (Formate--tetrahydrofolate ligase OS=Staphylococcus aureus (strain MW2) GN=fhs PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.134e-14
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 2
Query:    2 EMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDV 226
            + +   G+   P+CMAKTQYSFS +    GAP+GF + IR++ A  GAGFI  L G + TMPGLP +P    +DV
Sbjct:  471 KQFKENGWDNYPVCMAKTQYSFSDDQTLLGAPSGFEITIRELEAKTGAGFIVALTGAIMTMPGLPKKPAALNMDV 545          
BLAST of BG791315 vs. ExPASy Swiss-Prot
Match: FTHS_STAAT (Formate--tetrahydrofolate ligase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=fhs PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.134e-14
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 2
Query:    2 EMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDV 226
            + +   G+   P+CMAKTQYSFS +    GAP+GF + IR++ A  GAGFI  L G + TMPGLP +P    +DV
Sbjct:  471 KQFKENGWDNYPVCMAKTQYSFSDDQTLLGAPSGFEITIRELEAKTGAGFIVALTGAIMTMPGLPKKPAALNMDV 545          
The following BLAST results are available for this feature:
BLAST of BG791315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
FTHS_RHILO8.681e-1556.45Formate--tetrahydrofolate ligase OS=Rhizobium loti... [more]
FTHS_PROMH8.681e-1555.07Formate--tetrahydrofolate ligase OS=Proteus mirabi... [more]
FTHS_MESSB8.681e-1550.00Formate--tetrahydrofolate ligase OS=Mesorhizobium ... [more]
FTHS2_STRPM8.681e-1555.07Formate--tetrahydrofolate ligase 2 OS=Streptococcu... [more]
FTHS2_STRPD8.681e-1555.07Formate--tetrahydrofolate ligase 2 OS=Streptococcu... [more]
FTHS2_STRP38.681e-1555.07Formate--tetrahydrofolate ligase 2 OS=Streptococcu... [more]
FTHS2_STRP18.681e-1555.07Formate--tetrahydrofolate ligase 2 OS=Streptococcu... [more]
FTHS_VIBCH1.134e-1451.43Formate--tetrahydrofolate ligase OS=Vibrio cholera... [more]
FTHS_STAAW1.134e-1448.00Formate--tetrahydrofolate ligase OS=Staphylococcus... [more]
FTHS_STAAT1.134e-1448.00Formate--tetrahydrofolate ligase OS=Staphylococcus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCs-31d Citrus sinensis flavedo cells Citrus sinensis cDNA clone Cs-31d, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BG791315 ID=BG791315; Name=BG791315; organism=Citrus sinensis; type=EST; length=226bp
CGAAATGTACACCGGGCAAGGGTTTTCTGGCTTACCAATTTGCATGGCAA
AAACCCAGTATTCATTTTCACACAATGCCGCCGAGAAGGGAGCCCCAACT
GGGTTTATCTTACCGATAAGGGATGTAAGAGCTAGCATTGGGGCTGGATT
CATTTATCCTTTGGTTGGAACAATGAGTACAATGCCAGGTCTCCCAACAA
GGCCATGCTTTTACGAGATTGATGTC
back to top