BQ622912

Overview
NameBQ622912
Unique NameBQ622912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9861 contig Csv1_Contig9861:859..1322. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB1_CAEBR (Tubulin beta-1 chain OS=Caenorhabditis briggsae GN=mec-7 PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 1.144e-75
Identity = 130/154 (84.42%), Postives = 147/154 (95.45%), Query Frame = 2 
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFM GFAPLTSR +QQYRA+TVPELTQQ +DAKNMM A DPRHGRYLTA+A+FRG+MS KEVDEQM+N+QNKNSSYFV+WIPNNVK++VCDIPPRGL M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN
Sbjct:  263 LHFFMPGFAPLTSRSNQQYRAITVPELTQQCFDAKNMMAACDPRHGRYLTAAAIFRGRMSMKEVDEQMLNIQNKNSSYFVDWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 416
[Close]
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB_THAWE (Tubulin beta chain OS=Thalassiosira weissflogii PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 2.549e-75
Identity = 128/154 (83.12%), Postives = 147/154 (95.45%), Query Frame = 2 
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFMVG+APLTSRGSQQYRALTVPELTQQ +DAKNMMCAADPRHGRYLT + +FRG+MS+KEVDEQM+NV NK+SSYFVEWIPNNVK+S+CDIPP+GL MA+TF+GN+T++QE ++RV+EQFT MFRRKAFLHWYTGEGMDEMEFTEAESNMN
Sbjct:  263 LHFFMVGYAPLTSRGSQQYRALTVPELTQQCFDAKNMMCAADPRHGRYLTCAVLFRGRMSSKEVDEQMLNVVNKSSSYFVEWIPNNVKASICDIPPKGLKMATTFVGNTTAVQETWKRVAEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMN 416
[Close]
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB3_RAT (Tubulin beta-3 chain OS=Rattus norvegicus GN=Tubb3 PE=1 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 3.329e-75
Identity = 131/154 (85.06%), Postives = 145/154 (94.16%), Query Frame = 2 
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFM GFAPLT+RGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT + +FRG+MS KEVDEQM+ +Q+KNSSYFVEWIPNNVK +VCDIPPRGL M+STFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN
Sbjct:  263 LHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 416
[Close]
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB3_MOUSE (Tubulin beta-3 chain OS=Mus musculus GN=Tubb3 PE=1 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 3.329e-75
Identity = 131/154 (85.06%), Postives = 145/154 (94.16%), Query Frame = 2 
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFM GFAPLT+RGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT + +FRG+MS KEVDEQM+ +Q+KNSSYFVEWIPNNVK +VCDIPPRGL M+STFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN
Sbjct:  263 LHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 416
[Close]
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB3_MACFA (Tubulin beta-3 chain OS=Macaca fascicularis GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 3.329e-75
Identity = 131/154 (85.06%), Postives = 145/154 (94.16%), Query Frame = 2 
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFM GFAPLT+RGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT + +FRG+MS KEVDEQM+ +Q+KNSSYFVEWIPNNVK +VCDIPPRGL M+STFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN
Sbjct:  263 LHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 416
[Close]
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB3_HUMAN (Tubulin beta-3 chain OS=Homo sapiens GN=TUBB3 PE=1 SV=2)

HSP 1 Score: 280.026 bits (715), Expect = 3.329e-75
Identity = 131/154 (85.06%), Postives = 145/154 (94.16%), Query Frame = 2 
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFM GFAPLT+RGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT + +FRG+MS KEVDEQM+ +Q+KNSSYFVEWIPNNVK +VCDIPPRGL M+STFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN
Sbjct:  263 LHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 416
[Close]
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB3_BOVIN (Tubulin beta-3 chain OS=Bos taurus GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 3.329e-75
Identity = 131/154 (85.06%), Postives = 145/154 (94.16%), Query Frame = 2 
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFM GFAPLT+RGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT + +FRG+MS KEVDEQM+ +Q+KNSSYFVEWIPNNVK +VCDIPPRGL M+STFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN
Sbjct:  263 LHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 416
[Close]
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB4_CHICK (Tubulin beta-4 chain OS=Gallus gallus PE=1 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 5.678e-75
Identity = 131/154 (85.06%), Postives = 144/154 (93.51%), Query Frame = 2 
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFM GFAPLT RGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT + +FRG+MS KEVDEQM+ +Q+KNSSYFVEWIPNNVK +VCDIPPRGL M+STFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN
Sbjct:  263 LHFFMPGFAPLTRRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 416
[Close]
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB6_MOUSE (Tubulin beta-6 chain OS=Mus musculus GN=Tubb6 PE=1 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 7.416e-75
Identity = 131/154 (85.06%), Postives = 144/154 (93.51%), Query Frame = 2 
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFM GFAPLT+RGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT + +FRG MS KEVDEQM+ +QNKNSSYFVEWIPNNVK +VCDIPPRGL MASTFIGNST+IQE+F+R+SEQF+AMFRRKAFLHW+TGEGMDEMEFTEAESNMN
Sbjct:  263 LHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVATVFRGPMSMKEVDEQMLAIQNKNSSYFVEWIPNNVKVAVCDIPPRGLKMASTFIGNSTAIQELFKRISEQFSAMFRRKAFLHWFTGEGMDEMEFTEAESNMN 416
[Close]
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB5_CHICK (Tubulin beta-5 chain OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 7.416e-75
Identity = 131/154 (85.06%), Postives = 144/154 (93.51%), Query Frame = 2 
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFM GFAPLT+RGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT + +FRG MS KEVDEQM+ +QNKNSSYFVEWIPNNVK +VCDIPPRGL MASTFIGNST+IQE+F+R+SEQF+AMFRRKAFLHW+TGEGMDEMEFTEAESNMN
Sbjct:  263 LHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVATVFRGPMSMKEVDEQMLAIQNKNSSYFVEWIPNNVKVAVCDIPPRGLKMASTFIGNSTAIQELFKRISEQFSAMFRRKAFLHWFTGEGMDEMEFTEAESNMN 416
The following BLAST results are available for this feature:
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBB1_CAEBR1.144e-7584.42Tubulin beta-1 chain OS=Caenorhabditis briggsae GN... [more]
TBB_THAWE2.549e-7583.12Tubulin beta chain OS=Thalassiosira weissflogii PE... [more]
TBB3_RAT3.329e-7585.06Tubulin beta-3 chain OS=Rattus norvegicus GN=Tubb3... [more]
TBB3_MOUSE3.329e-7585.06Tubulin beta-3 chain OS=Mus musculus GN=Tubb3 PE=1... [more]
TBB3_MACFA3.329e-7585.06Tubulin beta-3 chain OS=Macaca fascicularis GN=TUB... [more]
TBB3_HUMAN3.329e-7585.06Tubulin beta-3 chain OS=Homo sapiens GN=TUBB3 PE=1... [more]
TBB3_BOVIN3.329e-7585.06Tubulin beta-3 chain OS=Bos taurus GN=TUBB3 PE=2 S... [more]
TBB4_CHICK5.678e-7585.06Tubulin beta-4 chain OS=Gallus gallus PE=1 SV=1[more]
TBB6_MOUSE7.416e-7585.06Tubulin beta-6 chain OS=Mus musculus GN=Tubb6 PE=1... [more]
TBB5_CHICK7.416e-7585.06Tubulin beta-5 chain OS=Gallus gallus PE=3 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00003 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00003 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622912 ID=BQ622912; Name=BQ622912; organism=Citrus sinensis; type=EST; length=464bp
CCTGCACTTCTTCATGGTTGGGTTTGCTCCCCTTACCTCCCGTGGTTCTC
AGCAGTACCGTGCCTTGACAGTCCCAGAACTTACCCAACAAATGTGGGAT
GCCAAGAACATGATGTGTGCTGCCGACCCAAGGCATGGTCGTTACCTCAC
TGCTTCTGCCATGTTCAGGGGTAAAATGAGCACCAAGGAAGTTGACGAGC
AGATGATCAATGTTCAAAACAAAAACTCTTCCTACTTTGTGGAGTGGATT
CCAAACAATGTGAAGTCCAGTGTTTGTGACATTCCTCCCAGAGGTCTCTC
CATGGCATCCACCTTCATCGGGAACTCAACATCCATCCAAGAAATGTTCC
GAAGAGTGAGTGAGCAATTCACAGCTATGTTTAGGAGAAAGGCTTTCCTT
CACTGGTACACTGGTGAAGGGATGGATGAAATGGAGTTCACTGAAGCTGA
GAGCAATATGAATG
back to top