BQ622912

Overview
NameBQ622912
Unique NameBQ622912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB2_PHYPO (Tubulin beta-2 chain OS=Physarum polycephalum GN=BETC PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 9.381e-70
Identity = 120/154 (77.92%), Postives = 142/154 (92.21%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFF++G+APLT+R +  +RALTVPELTQQ++D++NMM A+DPRHGRYLTASA FRGKMSTKEVDEQM  VQ KNSS+FVEWIPNN+KSSVCDIPP+G+ M++TFIGN+T IQE+F+R+  QF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMN
Sbjct:  263 LHFFLIGYAPLTARSAMGFRALTVPELTQQIFDSRNMMAASDPRHGRYLTASATFRGKMSTKEVDEQMHAVQTKNSSFFVEWIPNNIKSSVCDIPPKGMKMSATFIGNNTCIQELFKRIGLQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 416          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBBN_GUITH (Tubulin beta chain, nucleomorph OS=Guillardia theta GN=tubB PE=3 SV=2)

HSP 1 Score: 261.536 bits (667), Expect = 1.225e-69
Identity = 121/153 (79.08%), Postives = 141/153 (92.16%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            LHFFMVGFAPL SRGSQQYR++TV +LTQQM+D+KNMM A DP++GRYLTA+A FRGK+STKEVD+QMI +QNK S +FVEWIP+N+KSSVCDIPP+G+ M++ FIGNSTSIQE+F+RV EQF AMFRRKAFLHWYTGEGMDEMEFTEAESNM
Sbjct:  263 LHFFMVGFAPLGSRGSQQYRSMTVNDLTQQMFDSKNMMAACDPKNGRYLTAAAYFRGKISTKEVDDQMIEIQNKQSEHFVEWIPHNIKSSVCDIPPKGMKMSAAFIGNSTSIQELFKRVGEQFQAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: YI016_HUMAN (Putative tubulin beta chain-like protein ENSP00000290377 OS=Homo sapiens PE=5 SV=2)

HSP 1 Score: 261.151 bits (666), Expect = 1.600e-69
Identity = 121/154 (78.57%), Postives = 140/154 (90.91%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFM GFAPLTSRGSQQYRALTV ELTQQM+DAKNM  A DPRHGRYLTA+A+F+G+M  +EVDEQM N+Q+KNSSYF +W P+NVK+++CDIPPRGL M+++FIGN+ +IQE+F  VSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN
Sbjct:  191 LHFFMPGFAPLTSRGSQQYRALTVAELTQQMFDAKNMRAARDPRHGRYLTAAAIFQGRMPMREVDEQMFNIQDKNSSYFADWFPDNVKTAICDIPPRGLKMSASFIGNNAAIQELFTCVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 344          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB_UROFA (Tubulin beta chain OS=Uromyces fabae GN=TBB1 PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 2.730e-69
Identity = 121/153 (79.08%), Postives = 141/153 (92.16%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            LHFFMVGFAPLT+RGSQQYRA+TVPELT QM+DAKNMM A+DPRHGRYLT +A FRGK+S KEV+E M++VQNKNS+YFVEWIPNNV+++ CDI PR   M+ TFIGNST+IQ++F+RV++QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM
Sbjct:  263 LHFFMVGFAPLTARGSQQYRAITVPELTSQMFDAKNMMAASDPRHGRYLTVAAYFRGKVSMKEVEENMLSVQNKNSNYFVEWIPNNVQTAHCDIAPRAHKMSVTFIGNSTAIQDLFKRVADQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB_RHYSE (Tubulin beta chain OS=Rhynchosporium secalis PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 2.730e-69
Identity = 121/154 (78.57%), Postives = 141/154 (91.56%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFMVGFAPLTSRG+  +RA+TVPELTQQM+D KNMM A+D R+GRYLT SA+FRGK+S KEV++QM NVQNKNSSYFVEWIP NV++++C IPPRGL M+STF+GNSTSIQE+F+R+ +QFT MFRRKAFLHWYTGEGMDEMEFTEAESNMN
Sbjct:  263 LHFFMVGFAPLTSRGAHSFRAVTVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPTNVQTALCSIPPRGLKMSSTFVGNSTSIQELFKRIGDQFTRMFRRKAFLHWYTGEGMDEMEFTEAESNMN 416          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB_ERYGR (Tubulin beta chain OS=Erysiphe graminis subsp. hordei GN=TUB2 PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 2.730e-69
Identity = 122/154 (79.22%), Postives = 141/154 (91.56%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFMVGFAPLTSRG+  +RA+TVPELTQQM+D KNMM A+D R+GRYLT SA+FRGK+S KEV++QM NVQ KN SYFVEWIPNNV++++C IPPRGL M+STF+GNSTSIQE+F+RV +QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN
Sbjct:  263 LHFFMVGFAPLTSRGAHSFRAVTVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQQKNVSYFVEWIPNNVQTALCSIPPRGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 416          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB_GIBZE (Tubulin beta chain OS=Gibberella zeae GN=TUB2 PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 3.565e-69
Identity = 121/154 (78.57%), Postives = 144/154 (93.51%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFMVGFAPLTSRG+  +RA++VPELTQQM+D KNMM A+D R+GRYLT SA+FRG+++ KEV++QM NVQ+KNSSYFVEWIPNN+++++C IPPRGL+M+STFIGNSTSIQE+F+RV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN
Sbjct:  263 LHFFMVGFAPLTSRGAHSFRAVSVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGRVAMKEVEDQMRNVQSKNSSYFVEWIPNNIQTALCAIPPRGLTMSSTFIGNSTSIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 416          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB_ACRCO (Tubulin beta chain OS=Acremonium coenophialum GN=TUB2 PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 3.565e-69
Identity = 122/154 (79.22%), Postives = 142/154 (92.21%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFMVGFAPLTSRG+  +RA++VPELTQQM+D KNMM A+D R+GRYLT SA+FRGK++ KEV++QM NVQNKNSSYFVEWIPNN+++++C IPPR L M+STFIGNSTSIQE+F+RV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN
Sbjct:  263 LHFFMVGFAPLTSRGAHSFRAVSVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVAMKEVEDQMRNVQNKNSSYFVEWIPNNIQTALCAIPPRDLKMSSTFIGNSTSIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 416          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB2_COLGL (Tubulin beta-2 chain OS=Colletotrichum gloeosporioides GN=TUB2 PE=3 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 3.565e-69
Identity = 120/154 (77.92%), Postives = 143/154 (92.86%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFMVGFAPLTSRG+  +RA++VPELTQQM+D KNMM A+D R+GRYLT SA+FRGK++ K+V++QM NVQNKNSSYFVEWIPNNV++++C IPPRGL M+STF+GN+T+IQE+F+RV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN
Sbjct:  263 LHFFMVGFAPLTSRGAHSFRAVSVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVAMKDVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPPRGLKMSSTFVGNATAIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 416          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB_CEPAC (Tubulin beta chain OS=Cephalosporium acremonium GN=TUB2 PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 4.656e-69
Identity = 121/154 (78.57%), Postives = 143/154 (92.86%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFMVGFAPLTSRG+  +RA++VPELTQQM+D KNMM A+D R+GRYLT SA+FRGK++ KEV++QM NVQ+KNSSYFVEWIPNN+++++C IPPRGL M+STFIGNSTSIQE+F+RV +QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN
Sbjct:  263 LHFFMVGFAPLTSRGAHSFRAVSVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVAMKEVEDQMRNVQSKNSSYFVEWIPNNIQTALCAIPPRGLKMSSTFIGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 416          
The following BLAST results are available for this feature:
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBB2_PHYPO9.381e-7077.92Tubulin beta-2 chain OS=Physarum polycephalum GN=B... [more]
TBBN_GUITH1.225e-6979.08Tubulin beta chain, nucleomorph OS=Guillardia thet... [more]
YI016_HUMAN1.600e-6978.57Putative tubulin beta chain-like protein ENSP00000... [more]
TBB_UROFA2.730e-6979.08Tubulin beta chain OS=Uromyces fabae GN=TBB1 PE=3 ... [more]
TBB_RHYSE2.730e-6978.57Tubulin beta chain OS=Rhynchosporium secalis PE=3 ... [more]
TBB_ERYGR2.730e-6979.22Tubulin beta chain OS=Erysiphe graminis subsp. hor... [more]
TBB_GIBZE3.565e-6978.57Tubulin beta chain OS=Gibberella zeae GN=TUB2 PE=3... [more]
TBB_ACRCO3.565e-6979.22Tubulin beta chain OS=Acremonium coenophialum GN=T... [more]
TBB2_COLGL3.565e-6977.92Tubulin beta-2 chain OS=Colletotrichum gloeosporio... [more]
TBB_CEPAC4.656e-6978.57Tubulin beta chain OS=Cephalosporium acremonium GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00003 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00003 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622912 ID=BQ622912; Name=BQ622912; organism=Citrus sinensis; type=EST; length=464bp
CCTGCACTTCTTCATGGTTGGGTTTGCTCCCCTTACCTCCCGTGGTTCTC
AGCAGTACCGTGCCTTGACAGTCCCAGAACTTACCCAACAAATGTGGGAT
GCCAAGAACATGATGTGTGCTGCCGACCCAAGGCATGGTCGTTACCTCAC
TGCTTCTGCCATGTTCAGGGGTAAAATGAGCACCAAGGAAGTTGACGAGC
AGATGATCAATGTTCAAAACAAAAACTCTTCCTACTTTGTGGAGTGGATT
CCAAACAATGTGAAGTCCAGTGTTTGTGACATTCCTCCCAGAGGTCTCTC
CATGGCATCCACCTTCATCGGGAACTCAACATCCATCCAAGAAATGTTCC
GAAGAGTGAGTGAGCAATTCACAGCTATGTTTAGGAGAAAGGCTTTCCTT
CACTGGTACACTGGTGAAGGGATGGATGAAATGGAGTTCACTGAAGCTGA
GAGCAATATGAATG
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