BQ622912

Overview
NameBQ622912
Unique NameBQ622912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB1_TRIVE (Tubulin beta-1 chain OS=Trichoderma virens PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 8.218e-66
Identity = 114/154 (74.03%), Postives = 139/154 (90.26%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFMVGFAPLTS G+  +RA++VPELTQQM D KNMM A+D R+GRYLT S +FRGK++ KEV++QM ++QNKNS+YFVEWIPNN+++++C IPP+GL ++STF+GNST+IQE+FRRV EQFTAMFRRKAFLHWYT EGMDEMEFTEAESNMN
Sbjct:  263 LHFFMVGFAPLTSPGAHSFRAVSVPELTQQMLDPKNMMAASDFRNGRYLTCSTIFRGKVAMKEVEDQMRSIQNKNSTYFVEWIPNNIQTALCSIPPKGLKISSTFVGNSTAIQEIFRRVGEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMN 416          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB_YEAST (Tubulin beta chain OS=Saccharomyces cerevisiae GN=TUB2 PE=1 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 1.073e-65
Identity = 114/154 (74.03%), Postives = 139/154 (90.26%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFMVG+APLT+ GSQ +R+LTVPELTQQM+DAKNMM AADPR+GRYLT +A FRGK+S KEV+++M  VQ+KNS YFVEWIPNNV+++VC + P+GL MA+TFI NSTSIQE+F+RV +QF+AMF+RKAFLHWYT EGMDE+EF+EAESNMN
Sbjct:  263 LHFFMVGYAPLTAIGSQSFRSLTVPELTQQMFDAKNMMAAADPRNGRYLTVAAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAVCSVAPQGLDMAATFIANSTSIQELFKRVGDQFSAMFKRKAFLHWYTSEGMDELEFSEAESNMN 416          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB2_EMENI (Tubulin beta-2 chain OS=Emericella nidulans GN=tubC PE=3 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 1.831e-65
Identity = 113/154 (73.38%), Postives = 139/154 (90.26%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFMVGFAPLTSR S  +R ++VPELTQQM+D++NMM AA+ ++GR+LT S +FRGK++ KEV++QM N+QNK SSYFVEWIPNNV++++C +PP+GL MA+TF+GNSTS+QE+F RVS QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN
Sbjct:  263 LHFFMVGFAPLTSRSSSSFRTISVPELTQQMFDSRNMMTAANYQNGRFLTCSTLFRGKVAMKEVEDQMRNMQNKYSSYFVEWIPNNVQTALCSMPPKGLKMAATFVGNSTSVQELFNRVSNQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 416          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB_USTVI (Tubulin beta chain OS=Ustilago violacea PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 2.024e-64
Identity = 111/154 (72.08%), Postives = 135/154 (87.66%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFF VGFAPLT+RGS QYRA+TV ELT QM+DAKNMM A+DPRHGRYLT +A FRGK+S KEV++QM+++Q KNS YFVEWIPNNV+S+ C++ PRGL M+ TFIGN+TSIQE+F+RV + F  MFRR+AFLHWYTGEGMDEMEF+EA +NM+
Sbjct:  263 LHFFTVGFAPLTARGSSQYRAVTVAELTAQMFDAKNMMAASDPRHGRYLTVAAYFRGKVSMKEVEDQMVSIQQKNSQYFVEWIPNNVQSAHCEVAPRGLKMSVTFIGNNTSIQELFKRVGDHFDVMFRRRAFLHWYTGEGMDEMEFSEASANMH 416          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB_ENCIN (Tubulin beta chain OS=Encephalitozoon intestinalis GN=TUB2 PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 3.453e-64
Identity = 112/154 (72.73%), Postives = 138/154 (89.61%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFF+VGFAPLT+ G+Q+++  +V ELTQQM+D+KNMM A DP+ GRYLT +AMFRGK+S K+VDEQM  VQ+KNSS FVEWIP+NVK++VCDI P GL M++TF+GN+TSIQE+F+R+S+QFT MFRRKAFLHWYTGEGMDEMEF+EAESNMN
Sbjct:  263 LHFFVVGFAPLTAVGTQKFKTYSVSELTQQMFDSKNMMTACDPKKGRYLTVAAMFRGKISMKDVDEQMSMVQSKNSSLFVEWIPSNVKTAVCDIAPTGLEMSATFVGNTTSIQELFKRISDQFTVMFRRKAFLHWYTGEGMDEMEFSEAESNMN 416          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB_ENCCU (Tubulin beta chain OS=Encephalitozoon cuniculi GN=TUB2 PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 2.238e-63
Identity = 111/154 (72.08%), Postives = 136/154 (88.31%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFF+ GFAPL + G+Q+++  +V ELTQQM+D+KNMM A DPR GRYLT +AMFRGK+S K+VDEQM  VQ+KNSS FVEWIP+NVK++VCDI P GL M++TF+GN+TSIQE+F+R+S+QFT MFRRKAFLHWYTGEGMDEMEF+EAESNMN
Sbjct:  263 LHFFVAGFAPLIAIGTQKFKTYSVSELTQQMFDSKNMMTACDPRKGRYLTVAAMFRGKISMKDVDEQMSMVQSKNSSLFVEWIPSNVKTAVCDIAPTGLEMSATFVGNTTSIQELFKRISDQFTVMFRRKAFLHWYTGEGMDEMEFSEAESNMN 416          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB1_TRIVI (Tubulin beta-1 chain OS=Trichoderma viride GN=tub1 PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 2.238e-63
Identity = 113/154 (73.38%), Postives = 135/154 (87.66%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFMVGFAPLTS G+  +RA+TVPELTQQM D KNMM A+D R+GRYLT S +FRGK++ KEV++QM  VQNKNS+YFVEWIPNN++++    PPRGL ++STF+GNST+IQE+FRRV EQF+AMFRR+AFLHWYT EGMDEMEFTEAESNMN
Sbjct:  265 LHFFMVGFAPLTSPGAHSFRAVTVPELTQQMMDPKNMMAASDFRNGRYLTCSTIFRGKVAMKEVEDQMRTVQNKNSAYFVEWIPNNIQTACALSPPRGLKISSTFVGNSTAIQEIFRRVGEQFSAMFRRQAFLHWYTSEGMDEMEFTEAESNMN 418          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB_USTMA (Tubulin beta chain OS=Ustilago maydis GN=UM05828 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 4.986e-63
Identity = 109/153 (71.24%), Postives = 137/153 (89.54%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            LHFFMVGF+PLT+RGSQ YRA+T+PE+TQQ +D+KNMM A D R GRYLT +A FRGK+S K+V++QM + Q K+S+ FVEWIPNNV+++ CDIPPRGL M+ TFIGNST+IQ++F+R++EQF+AMF+RKAFLHWYTGEGMDEMEFTEAESN+
Sbjct:  263 LHFFMVGFSPLTARGSQSYRAVTIPEITQQAFDSKNMMTACDTRLGRYLTCAAYFRGKVSMKDVEDQMQSFQQKHSTQFVEWIPNNVQTAQCDIPPRGLKMSVTFIGNSTAIQDVFKRIAEQFSAMFKRKAFLHWYTGEGMDEMEFTEAESNL 415          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB1_HUMAN (Tubulin beta-1 chain OS=Homo sapiens GN=TUBB1 PE=1 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 4.986e-63
Identity = 113/154 (73.38%), Postives = 136/154 (88.31%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFM GFAPLT++GSQQYRAL+V ELTQQM+DA+N M A D R GRYLT + +FRGKMSTKEVD+Q+++VQ +NSS FVEWIPNNVK +VCDIPPRGLSMA+TFIGN+T+IQE+F RVSE F+AMF+RKAF+HWYT EGMD  EF EAE+N++
Sbjct:  263 LHFFMPGFAPLTAQGSQQYRALSVAELTQQMFDARNTMAACDLRRGRYLTVACIFRGKMSTKEVDQQLLSVQTRNSSCFVEWIPNNVKVAVCDIPPRGLSMAATFIGNNTAIQEIFNRVSEHFSAMFKRKAFVHWYTSEGMDINEFGEAENNIH 416          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB_ENCHE (Tubulin beta chain OS=Encephalitozoon hellem GN=TUB2 PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 1.451e-62
Identity = 110/154 (71.43%), Postives = 136/154 (88.31%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFF+VG APL + G+Q+++  +V ELTQQM+D+KNMM A DPR GRYLT +AMFRGK+S K+VDEQM  VQ+KNS+ FVEWIP+NVK++VCDI P GL M++TF+GN+TSIQE+F+R+S+QFT MFRRKAFLHWYTGEGMDEMEF+EAESNMN
Sbjct:  263 LHFFVVGSAPLIAIGTQKFKTYSVSELTQQMFDSKNMMTACDPRKGRYLTVAAMFRGKISMKDVDEQMSMVQSKNSTLFVEWIPSNVKTAVCDIAPTGLEMSATFVGNTTSIQELFKRISDQFTVMFRRKAFLHWYTGEGMDEMEFSEAESNMN 416          
The following BLAST results are available for this feature:
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBB1_TRIVE8.218e-6674.03Tubulin beta-1 chain OS=Trichoderma virens PE=2 SV... [more]
TBB_YEAST1.073e-6574.03Tubulin beta chain OS=Saccharomyces cerevisiae GN=... [more]
TBB2_EMENI1.831e-6573.38Tubulin beta-2 chain OS=Emericella nidulans GN=tub... [more]
TBB_USTVI2.024e-6472.08Tubulin beta chain OS=Ustilago violacea PE=2 SV=1[more]
TBB_ENCIN3.453e-6472.73Tubulin beta chain OS=Encephalitozoon intestinalis... [more]
TBB_ENCCU2.238e-6372.08Tubulin beta chain OS=Encephalitozoon cuniculi GN=... [more]
TBB1_TRIVI2.238e-6373.38Tubulin beta-1 chain OS=Trichoderma viride GN=tub1... [more]
TBB_USTMA4.986e-6371.24Tubulin beta chain OS=Ustilago maydis GN=UM05828 P... [more]
TBB1_HUMAN4.986e-6373.38Tubulin beta-1 chain OS=Homo sapiens GN=TUBB1 PE=1... [more]
TBB_ENCHE1.451e-6271.43Tubulin beta chain OS=Encephalitozoon hellem GN=TU... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00003 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00003 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622912 ID=BQ622912; Name=BQ622912; organism=Citrus sinensis; type=EST; length=464bp
CCTGCACTTCTTCATGGTTGGGTTTGCTCCCCTTACCTCCCGTGGTTCTC
AGCAGTACCGTGCCTTGACAGTCCCAGAACTTACCCAACAAATGTGGGAT
GCCAAGAACATGATGTGTGCTGCCGACCCAAGGCATGGTCGTTACCTCAC
TGCTTCTGCCATGTTCAGGGGTAAAATGAGCACCAAGGAAGTTGACGAGC
AGATGATCAATGTTCAAAACAAAAACTCTTCCTACTTTGTGGAGTGGATT
CCAAACAATGTGAAGTCCAGTGTTTGTGACATTCCTCCCAGAGGTCTCTC
CATGGCATCCACCTTCATCGGGAACTCAACATCCATCCAAGAAATGTTCC
GAAGAGTGAGTGAGCAATTCACAGCTATGTTTAGGAGAAAGGCTTTCCTT
CACTGGTACACTGGTGAAGGGATGGATGAAATGGAGTTCACTGAAGCTGA
GAGCAATATGAATG
back to top