BQ622912

Overview
NameBQ622912
Unique NameBQ622912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9861 contig Csv1_Contig9861:859..1322. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA3_MAIZE (Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.732e-26
Identity = 55/161 (34.16%), Postives = 92/161 (57.14%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSV-----CDIPPRGLS---MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  L+V E+T   ++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +       +P   L+    A   I NSTS+ E+F R++ +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  265 IHFMLSSYAPVISSAKAFHEQLSVAEITSSAFEPASMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQAPTVVPGADLAKVQRAVCMISNSTSVVEVFSRINSKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA1_HOMAM (Tubulin alpha-1 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.732e-26
Identity = 55/161 (34.16%), Postives = 91/161 (56.52%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +V +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  + N++ K +  FV+W P   K  +   PP          +S A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EFTEA  ++
Sbjct:  265 IHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIANIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGADLAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDL 425          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA3_HOMAM (Tubulin alpha-3 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.874e-26
Identity = 55/161 (34.16%), Postives = 90/161 (55.90%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG--------LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +V +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K S  FV+W P   K  +   PP          +S A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EFTEA  ++
Sbjct:  265 IHFPLVTYAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDL 425          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA2_CHLRE (Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii GN=TUBA2 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.874e-26
Identity = 55/161 (34.16%), Postives = 91/161 (56.52%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR---GLSMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  L+V E+T   ++  +MM   DP HG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP    G+ +A        I NST+I E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  265 IHFMLSSYAPIISAEKAYHEQLSVAEITNAAFEPASMMVKCDPLHGKYMACCLMYRGDVVPKDVNASVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGVDLAKVQRAVCMISNSTAIGEIFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA1_PELFA (Tubulin alpha-1 chain OS=Pelvetia fastigiata GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.874e-26
Identity = 52/161 (32.30%), Postives = 88/161 (54.66%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG--------LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  L+V E+T  +++   MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E   R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  265 IHFMLTSYAPIISAEKAYHEQLSVAEITNSVFEPAGMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTAVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBAN_PHYPO (Tubulin alpha-1B chain OS=Physarum polycephalum GN=ALTBN PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 6.366e-26
Identity = 55/161 (34.16%), Postives = 91/161 (56.52%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSV----CDIPPRG----LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  L+V ELT  +++  +MM   DPRHG+Y+    M+RG +  K+V   +  ++ K +  FV+W P   K  +      + P G    +  A   I N+T+I E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  265 IHFMLASYAPVISAEKAFHEQLSVAELTNTVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVTAAVAVIKTKRTIQFVDWCPTGFKCGINYQAPSVVPGGDLAKVQRALCMISNTTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA_ENCCU (Tubulin alpha chain OS=Encephalitozoon cuniculi GN=TUB1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.086e-25
Identity = 55/161 (34.16%), Postives = 92/161 (57.14%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGL--------SMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +V ++P+ S+    +  L+V E+T   ++ +N M   D R G+Y+    +FRG ++ KE +    NV+ K ++ FVEW P   K  +    P  L        S A   + N+T+I E ++R++ +F  MF ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  261 IHFPLVAYSPMLSKEKAAHEKLSVQEITNACFEPQNQMVRCDTRKGKYMACCLLFRGDVNPKEANNATANVKAKRTNQFVEWCPTGFKVGINSRKPTVLDGEAMAEVSRAVCALSNTTAISEAWKRLNNKFDLMFSKRAFVHWYVGEGMEEGEFSEAREDL 421          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA2_STYLE (Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.086e-25
Identity = 55/158 (34.81%), Postives = 88/158 (55.70%), Query Frame = 2
Query:   11 FMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            FM+  AP+ S     +  L+V E+T   ++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   I NST+I E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  267 FMLSSAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPSGDLAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 424          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA2_PELFA (Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.086e-25
Identity = 52/161 (32.30%), Postives = 88/161 (54.66%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  L+V E+T  +++   MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E   R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  265 IHFMLTSYAPIISAEKAYHEQLSVAEITNSVFEPAGMMTNCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBAN_GUITH (Tubulin alpha chain, nucleomorph OS=Guillardia theta GN=tubA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.852e-25
Identity = 54/161 (33.54%), Postives = 88/161 (54.66%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +   AP+ S     +   +  E+T   ++  +MM   DPR G+Y+    MFRG ++ K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   I NST+I E+F R++++F  M+ ++AF+HWY GEGM+E EF EA  +M
Sbjct:  265 IHFMLSSLAPVISLEMANHEQYSTAEITNAAFEPNSMMAKCDPRRGKYMACCLMFRGDVAPKDVNGSVAAIKTKKTIQFVDWCPTGFKCGINYQPPTVVPDGDLAKVDRAVCMISNSTAISEVFSRINKKFDLMYSKRAFVHWYVGEGMEEGEFNEAREDM 425          
The following BLAST results are available for this feature:
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBA3_MAIZE3.732e-2634.16Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 PE=2 SV... [more]
TBA1_HOMAM3.732e-2634.16Tubulin alpha-1 chain OS=Homarus americanus PE=2 S... [more]
TBA3_HOMAM4.874e-2634.16Tubulin alpha-3 chain OS=Homarus americanus PE=2 S... [more]
TBA2_CHLRE4.874e-2634.16Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii... [more]
TBA1_PELFA4.874e-2632.30Tubulin alpha-1 chain OS=Pelvetia fastigiata GN=TU... [more]
TBAN_PHYPO6.366e-2634.16Tubulin alpha-1B chain OS=Physarum polycephalum GN... [more]
TBA_ENCCU1.086e-2534.16Tubulin alpha chain OS=Encephalitozoon cuniculi GN... [more]
TBA2_STYLE1.086e-2534.81Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 S... [more]
TBA2_PELFA1.086e-2532.30Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TU... [more]
TBAN_GUITH1.852e-2533.54Tubulin alpha chain, nucleomorph OS=Guillardia the... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00003 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00003 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622912 ID=BQ622912; Name=BQ622912; organism=Citrus sinensis; type=EST; length=464bp
CCTGCACTTCTTCATGGTTGGGTTTGCTCCCCTTACCTCCCGTGGTTCTC
AGCAGTACCGTGCCTTGACAGTCCCAGAACTTACCCAACAAATGTGGGAT
GCCAAGAACATGATGTGTGCTGCCGACCCAAGGCATGGTCGTTACCTCAC
TGCTTCTGCCATGTTCAGGGGTAAAATGAGCACCAAGGAAGTTGACGAGC
AGATGATCAATGTTCAAAACAAAAACTCTTCCTACTTTGTGGAGTGGATT
CCAAACAATGTGAAGTCCAGTGTTTGTGACATTCCTCCCAGAGGTCTCTC
CATGGCATCCACCTTCATCGGGAACTCAACATCCATCCAAGAAATGTTCC
GAAGAGTGAGTGAGCAATTCACAGCTATGTTTAGGAGAAAGGCTTTCCTT
CACTGGTACACTGGTGAAGGGATGGATGAAATGGAGTTCACTGAAGCTGA
GAGCAATATGAATG
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