BQ622912

Overview
NameBQ622912
Unique NameBQ622912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9861 contig Csv1_Contig9861:859..1322. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA_EUPVA (Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.159e-25
Identity = 54/160 (33.75%), Postives = 89/160 (55.62%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPN---NVKSSVCDIPPRG----LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  + P+ S     +  L+V E+T   ++  +MM   DPRHG+Y+    MFRG +  K+V+  +  ++ K +  FV+W P     +      + P G    +  A   I NST+I E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  265 IHFMLSSYGPVISAEKAYHEQLSVAEITNSSFEPASMMAKCDPRHGKYMACCMMFRGDVVPKDVNAAVATIKTKRTIQFVDWSPGFKVGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 424          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA3_YEAST (Tubulin alpha-3 chain OS=Saccharomyces cerevisiae GN=TUB3 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.159e-25
Identity = 51/161 (31.68%), Postives = 91/161 (56.52%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +V +AP+ S+    + + +V E+T   ++  N M   DP  G+Y+    ++RG + T++V   +  V+NK +   V+W P   K  +C  PP          +  A   + N+T+I + ++R+ ++F  M+ ++AF+HWY GEGM+E EFTEA  ++
Sbjct:  266 IHFPLVSYAPILSKKRATHESNSVSEITNACFEPGNQMVKCDPTKGKYMANCLLYRGDVVTRDVQRAVEQVKNKKTVQMVDWCPTGFKIGICYEPPSVIPSSELANVDRAVCMLSNTTAIADAWKRIDQKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDL 426          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA_LEPDS (Tubulin alpha chain OS=Lepidoglyphus destructor PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 4.126e-25
Identity = 54/161 (33.54%), Postives = 89/161 (55.28%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +V +AP+ S     +  LTV E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K S  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  265 IHFPLVTYAPVISSEKAYHEQLTVSEITNTCFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA1_SCHPO (Tubulin alpha-1 chain OS=Schizosaccharomyces pombe GN=nda2 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 4.126e-25
Identity = 51/161 (31.68%), Postives = 93/161 (57.76%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +V ++P+ S     + + +V E+T Q ++  N M   DPR GRY+    ++RG +  ++V   + +++++ +  FV+W P   K  +C  PP+         ++ A   + N+TSI E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  269 IHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 429          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA_MYCGR (Tubulin alpha chain OS=Mycosphaerella graminicola PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.389e-25
Identity = 50/161 (31.06%), Postives = 92/161 (57.14%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG--------LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +V +AP+ S     + A +V E++   ++  + M   DPR+G+Y+    ++RG +  K+V + +  ++ K +  FV+W P   K  +C  PP+         ++ A   + N+T+I E +  +S +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  265 IHFPLVAYAPIVSAAKAAHEANSVQEISMSCFEPNSQMVKCDPRNGKYMATCLLYRGDVVPKDVHQAVATLKTKRTIQFVDWCPTGFKIGICYQPPQNVPNGDLAKVNRAVCMLSNTTAIAEAWSALSHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA_XENLA (Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 7.038e-25
Identity = 53/161 (32.92%), Postives = 88/161 (54.66%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  LTV ++T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K S  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M
Sbjct:  265 IHFPLATYAPVISAEKAYHEQLTVADITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA2_NEUCR (Tubulin alpha-B chain OS=Neurospora crassa GN=tba-2 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 7.038e-25
Identity = 51/161 (31.68%), Postives = 88/161 (54.66%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +V +AP+ S     + A +V E+T   ++  N M   DPRHG+Y+    ++RG +   +    +  ++ K +  FV+W P   K  +C  PP          ++ A   + N+T+I E +  +S +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  265 IHFPLVAYAPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYRGDVVPNDAHAAVATLKTKRTIQFVDWCPTGFKLGICYQPPHQVPNGDLAKVNRAVCMLSNTTAIAEAWSALSSKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA1C_RAT (Tubulin alpha-1C chain OS=Rattus norvegicus GN=Tuba1c PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.038e-25
Identity = 53/161 (32.92%), Postives = 88/161 (54.66%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  LTV E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M
Sbjct:  265 IHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLARVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA1C_MOUSE (Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.038e-25
Identity = 53/161 (32.92%), Postives = 88/161 (54.66%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  LTV E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M
Sbjct:  265 IHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA1C_CRIGR (Tubulin alpha-1C chain OS=Cricetulus griseus GN=TUBA1C PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.038e-25
Identity = 53/161 (32.92%), Postives = 88/161 (54.66%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  LTV E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M
Sbjct:  265 IHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425          
The following BLAST results are available for this feature:
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBA_EUPVA3.159e-2533.75Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1[more]
TBA3_YEAST3.159e-2531.68Tubulin alpha-3 chain OS=Saccharomyces cerevisiae ... [more]
TBA_LEPDS4.126e-2533.54Tubulin alpha chain OS=Lepidoglyphus destructor PE... [more]
TBA1_SCHPO4.126e-2531.68Tubulin alpha-1 chain OS=Schizosaccharomyces pombe... [more]
TBA_MYCGR5.389e-2531.06Tubulin alpha chain OS=Mycosphaerella graminicola ... [more]
TBA_XENLA7.038e-2532.92Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2... [more]
TBA2_NEUCR7.038e-2531.68Tubulin alpha-B chain OS=Neurospora crassa GN=tba-... [more]
TBA1C_RAT7.038e-2532.92Tubulin alpha-1C chain OS=Rattus norvegicus GN=Tub... [more]
TBA1C_MOUSE7.038e-2532.92Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c P... [more]
TBA1C_CRIGR7.038e-2532.92Tubulin alpha-1C chain OS=Cricetulus griseus GN=TU... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00003 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00003 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622912 ID=BQ622912; Name=BQ622912; organism=Citrus sinensis; type=EST; length=464bp
CCTGCACTTCTTCATGGTTGGGTTTGCTCCCCTTACCTCCCGTGGTTCTC
AGCAGTACCGTGCCTTGACAGTCCCAGAACTTACCCAACAAATGTGGGAT
GCCAAGAACATGATGTGTGCTGCCGACCCAAGGCATGGTCGTTACCTCAC
TGCTTCTGCCATGTTCAGGGGTAAAATGAGCACCAAGGAAGTTGACGAGC
AGATGATCAATGTTCAAAACAAAAACTCTTCCTACTTTGTGGAGTGGATT
CCAAACAATGTGAAGTCCAGTGTTTGTGACATTCCTCCCAGAGGTCTCTC
CATGGCATCCACCTTCATCGGGAACTCAACATCCATCCAAGAAATGTTCC
GAAGAGTGAGTGAGCAATTCACAGCTATGTTTAGGAGAAAGGCTTTCCTT
CACTGGTACACTGGTGAAGGGATGGATGAAATGGAGTTCACTGAAGCTGA
GAGCAATATGAATG
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