BQ622912

Overview
NameBQ622912
Unique NameBQ622912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9861 contig Csv1_Contig9861:859..1322. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA1B_PANTR (Tubulin alpha-1B chain OS=Pan troglodytes GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.038e-25
Identity = 53/161 (32.92%), Postives = 88/161 (54.66%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K S  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M
Sbjct:  265 IHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFVLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA_TORMA (Tubulin alpha chain OS=Torpedo marmorata PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 9.193e-25
Identity = 53/161 (32.92%), Postives = 88/161 (54.66%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K S  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M
Sbjct:  265 IHFPLATYAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA_NOTVI (Tubulin alpha chain OS=Notophthalmus viridescens PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 9.193e-25
Identity = 53/161 (32.92%), Postives = 88/161 (54.66%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG--------LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K S  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M
Sbjct:  265 IHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA_HAECO (Tubulin alpha chain OS=Haemonchus contortus PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 9.193e-25
Identity = 53/161 (32.92%), Postives = 88/161 (54.66%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  F+P+ S     +  L+V E+T   ++  N M   DPRHG+Y+    +FRG +  K+V+  +  ++ K S  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  265 IHFPLATFSPVISAEKAYHEQLSVAEITNMCFEPHNQMVKCDPRHGKYMAVCLLFRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVPRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA1C_HUMAN (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 9.193e-25
Identity = 52/161 (32.30%), Postives = 88/161 (54.66%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  LTV E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T++ E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M
Sbjct:  265 IHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA1B_RAT (Tubulin alpha-1B chain OS=Rattus norvegicus GN=Tuba1b PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 9.193e-25
Identity = 53/161 (32.92%), Postives = 88/161 (54.66%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K S  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M
Sbjct:  265 IHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA1B_PIG (Tubulin alpha-1B chain OS=Sus scrofa GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 9.193e-25
Identity = 53/161 (32.92%), Postives = 88/161 (54.66%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K S  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M
Sbjct:  265 IHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA1B_MOUSE (Tubulin alpha-1B chain OS=Mus musculus GN=Tuba1b PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 9.193e-25
Identity = 53/161 (32.92%), Postives = 88/161 (54.66%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K S  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M
Sbjct:  265 IHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA1B_MERUN (Tubulin alpha-1B chain OS=Meriones unguiculatus GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 9.193e-25
Identity = 53/161 (32.92%), Postives = 88/161 (54.66%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K S  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M
Sbjct:  265 IHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA1B_MACFA (Tubulin alpha-1B chain OS=Macaca fascicularis GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 9.193e-25
Identity = 53/161 (32.92%), Postives = 88/161 (54.66%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K S  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M
Sbjct:  265 IHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425          
The following BLAST results are available for this feature:
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBA1B_PANTR7.038e-2532.92Tubulin alpha-1B chain OS=Pan troglodytes GN=TUBA1... [more]
TBA_TORMA9.193e-2532.92Tubulin alpha chain OS=Torpedo marmorata PE=2 SV=1[more]
TBA_NOTVI9.193e-2532.92Tubulin alpha chain OS=Notophthalmus viridescens P... [more]
TBA_HAECO9.193e-2532.92Tubulin alpha chain OS=Haemonchus contortus PE=2 S... [more]
TBA1C_HUMAN9.193e-2532.30Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C P... [more]
TBA1B_RAT9.193e-2532.92Tubulin alpha-1B chain OS=Rattus norvegicus GN=Tub... [more]
TBA1B_PIG9.193e-2532.92Tubulin alpha-1B chain OS=Sus scrofa GN=TUBA1B PE=... [more]
TBA1B_MOUSE9.193e-2532.92Tubulin alpha-1B chain OS=Mus musculus GN=Tuba1b P... [more]
TBA1B_MERUN9.193e-2532.92Tubulin alpha-1B chain OS=Meriones unguiculatus GN... [more]
TBA1B_MACFA9.193e-2532.92Tubulin alpha-1B chain OS=Macaca fascicularis GN=T... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00003 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00003 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622912 ID=BQ622912; Name=BQ622912; organism=Citrus sinensis; type=EST; length=464bp
CCTGCACTTCTTCATGGTTGGGTTTGCTCCCCTTACCTCCCGTGGTTCTC
AGCAGTACCGTGCCTTGACAGTCCCAGAACTTACCCAACAAATGTGGGAT
GCCAAGAACATGATGTGTGCTGCCGACCCAAGGCATGGTCGTTACCTCAC
TGCTTCTGCCATGTTCAGGGGTAAAATGAGCACCAAGGAAGTTGACGAGC
AGATGATCAATGTTCAAAACAAAAACTCTTCCTACTTTGTGGAGTGGATT
CCAAACAATGTGAAGTCCAGTGTTTGTGACATTCCTCCCAGAGGTCTCTC
CATGGCATCCACCTTCATCGGGAACTCAACATCCATCCAAGAAATGTTCC
GAAGAGTGAGTGAGCAATTCACAGCTATGTTTAGGAGAAAGGCTTTCCTT
CACTGGTACACTGGTGAAGGGATGGATGAAATGGAGTTCACTGAAGCTGA
GAGCAATATGAATG
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