BQ622912

Overview
NameBQ622912
Unique NameBQ622912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9861 contig Csv1_Contig9861:859..1322. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA1A_RAT (Tubulin alpha-1A chain OS=Rattus norvegicus GN=Tuba1a PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.048e-24
Identity = 52/161 (32.30%), Postives = 88/161 (54.66%), Query Frame = 2 
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M
Sbjct:  265 IHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425
[Close]
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA1A_PANTR (Tubulin alpha-1A chain OS=Pan troglodytes GN=TUBA1A PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.048e-24
Identity = 52/161 (32.30%), Postives = 88/161 (54.66%), Query Frame = 2 
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M
Sbjct:  265 IHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425
[Close]
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA1A_MOUSE (Tubulin alpha-1A chain OS=Mus musculus GN=Tuba1a PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.048e-24
Identity = 52/161 (32.30%), Postives = 88/161 (54.66%), Query Frame = 2 
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M
Sbjct:  265 IHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425
[Close]
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA1A_HUMAN (Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.048e-24
Identity = 52/161 (32.30%), Postives = 88/161 (54.66%), Query Frame = 2 
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M
Sbjct:  265 IHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425
[Close]
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA1A_CRIGR (Tubulin alpha-1A chain OS=Cricetulus griseus GN=TUBA1A PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.048e-24
Identity = 52/161 (32.30%), Postives = 88/161 (54.66%), Query Frame = 2 
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M
Sbjct:  265 IHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425
[Close]
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA_ONCKE (Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.675e-24
Identity = 52/161 (32.30%), Postives = 88/161 (54.66%), Query Frame = 2 
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  L+V ++T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K S  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M
Sbjct:  259 IHFPLATYAPVISAEKAYHEQLSVADITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNSAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 419
[Close]
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA1C_BOVIN (Tubulin alpha-1C chain OS=Bos taurus GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.675e-24
Identity = 51/161 (31.68%), Postives = 88/161 (54.66%), Query Frame = 2 
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T++ E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M
Sbjct:  265 IHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425
[Close]
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA8_CHICK (Tubulin alpha-8 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.493e-24
Identity = 51/161 (31.68%), Postives = 89/161 (55.28%), Query Frame = 2 
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +V ++P+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  140 IHFPLVTYSPIISAEKAYHEQLSVSEITNACFEPSNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 300
[Close]
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA5_CHICK (Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.493e-24
Identity = 53/161 (32.92%), Postives = 89/161 (55.28%), Query Frame = 2 
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLSMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K S  FV+W P   K  +   PP    G  +A        + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  265 IHFPLATYAPVISAEKAYHEQLSVAEITNSCFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVAGGDLAKVQRIVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDI 425
[Close]
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA4_CHICK (Tubulin alpha-4 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.493e-24
Identity = 52/161 (32.30%), Postives = 88/161 (54.66%), Query Frame = 2 
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +V +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P  VK  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY  EGM+E EF EA  ++
Sbjct:  140 IHFPLVTYAPIISSERAYHEQLSVAEITSSCFEPNNQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRNIQFVDWCPTGVKVGINYQPPTVVPGGDLAQVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVSEGMEEGEFAEAREDL 300
The following BLAST results are available for this feature:
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBA1A_RAT2.048e-2432.30Tubulin alpha-1A chain OS=Rattus norvegicus GN=Tub... [more]
TBA1A_PANTR2.048e-2432.30Tubulin alpha-1A chain OS=Pan troglodytes GN=TUBA1... [more]
TBA1A_MOUSE2.048e-2432.30Tubulin alpha-1A chain OS=Mus musculus GN=Tuba1a P... [more]
TBA1A_HUMAN2.048e-2432.30Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A P... [more]
TBA1A_CRIGR2.048e-2432.30Tubulin alpha-1A chain OS=Cricetulus griseus GN=TU... [more]
TBA_ONCKE2.675e-2432.30Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1[more]
TBA1C_BOVIN2.675e-2431.68Tubulin alpha-1C chain OS=Bos taurus GN=TUBA1C PE=... [more]
TBA8_CHICK3.493e-2431.68Tubulin alpha-8 chain (Fragment) OS=Gallus gallus ... [more]
TBA5_CHICK3.493e-2432.92Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1[more]
TBA4_CHICK3.493e-2432.30Tubulin alpha-4 chain (Fragment) OS=Gallus gallus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00003 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00003 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622912 ID=BQ622912; Name=BQ622912; organism=Citrus sinensis; type=EST; length=464bp
CCTGCACTTCTTCATGGTTGGGTTTGCTCCCCTTACCTCCCGTGGTTCTC
AGCAGTACCGTGCCTTGACAGTCCCAGAACTTACCCAACAAATGTGGGAT
GCCAAGAACATGATGTGTGCTGCCGACCCAAGGCATGGTCGTTACCTCAC
TGCTTCTGCCATGTTCAGGGGTAAAATGAGCACCAAGGAAGTTGACGAGC
AGATGATCAATGTTCAAAACAAAAACTCTTCCTACTTTGTGGAGTGGATT
CCAAACAATGTGAAGTCCAGTGTTTGTGACATTCCTCCCAGAGGTCTCTC
CATGGCATCCACCTTCATCGGGAACTCAACATCCATCCAAGAAATGTTCC
GAAGAGTGAGTGAGCAATTCACAGCTATGTTTAGGAGAAAGGCTTTCCTT
CACTGGTACACTGGTGAAGGGATGGATGAAATGGAGTTCACTGAAGCTGA
GAGCAATATGAATG
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