BQ622912

Overview
NameBQ622912
Unique NameBQ622912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA3E_HUMAN (Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.957e-23
Identity = 51/161 (31.68%), Postives = 87/161 (54.04%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ + AF+HWY GEGM+E EF+EA  ++
Sbjct:  265 IHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLVHKFDLMYAKWAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.588e-23
Identity = 50/161 (31.06%), Postives = 87/161 (54.04%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +A + S     +  L+VPE+T   ++  N M   DPR G+Y+    ++RG +  K+V+  +  ++ + S  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  140 IHFPLTTYARIISAEKAYHEQLSVPEITNACFEFSNQMVKCDPRRGKYMACCLLYRGDVVPKDVNAAIAAIKTRRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 300          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.468e-22
Identity = 51/161 (31.68%), Postives = 88/161 (54.66%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR---GLSMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF M  FAP+ S     +   +V ++T   +++ N +   DPR G+Y+    ++RG +  KEV+  +   ++++S  FV+W P   K  + + PP    G  +A        + N+T+I E + R+  +F  M+ ++AFLHWY  EGM+E EF EA  ++
Sbjct:  272 IHFPMTAFAPIVSADKAYHEQFSVSDITTACFESSNQLVKCDPRLGKYMACCLLYRGDVVPKEVNAAIAATKSRHSVQFVDWCPTGFKVGINNRPPTVMPGGDLAKVHRSICMLSNTTAIVEAWARLDHKFDLMYAKRAFLHWYLREGMEEAEFLEAREDL 432          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBAA_SCHCO (Tubulin alpha-1A chain OS=Schizophyllum commune GN=TUB-1A PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.269e-22
Identity = 46/161 (28.57%), Postives = 87/161 (54.04%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +   AP+ S     + + +V E+T   ++  N M   DPR G+Y+  + ++RG +  K+ +  +  ++ K +  FV+W P   K  +C+ PP          +  +   + N+T+I   + R+  +F  ++ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  264 IHFPLATLAPIVSVDKAGHESNSVAEMTYSCFEPGNQMVKCDPRDGKYMACALLYRGDVVPKDTNAAVALIKTKRTIQFVDWCPTGFKLGICNEPPAHVPGGDLAKVKRSMCMLSNTTAISSAWSRLDHKFDLLYSKRAFVHWYVGEGMEEGEFSEARQDL 424          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.270e-22
Identity = 49/161 (30.43%), Postives = 85/161 (52.80%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +V +AP+ S     +  L+V E+T   ++  N M   DP+ G+Y+    ++RG +  K+V+  +  ++   S  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY  EGM+E EF EA  ++
Sbjct:  262 IHFPLVTYAPIISSDRAYHEQLSVAEITSSCFEPNNQMVKCDPQQGKYMACCMLYRGDVVPKDVNVAIAAIKTNRSLQFVDWCPTGFKVGINYQPPIPTPGGDLAQVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVSEGMEEGEFAEAREDL 422          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBAB_SCHCO (Tubulin alpha-1B chain OS=Schizophyllum commune GN=TUB-1B PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.577e-22
Identity = 52/165 (31.52%), Postives = 90/165 (54.55%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCD-----IP-------PRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +APL S   +Q+   +V E+T   +++ N M   D + G+Y+    ++RG +  K+    + +++ K +  FV+W P   K  VC+     +P       PR L M S    N+T+I   + R+  +F  M+R++AF+HWY GE M+E EF+EA  ++
Sbjct:  263 IHFPLASYAPLLSAPRRQHEQNSVEEMTFSCFESGNQMVKCDAKDGKYMACCLLYRGDVVPKDTQAAVASIKTKRTIQFVDWCPTGFKLGVCNEAPATVPGGDLAKVPRSLCMLS----NTTAIAAAWNRLDYKFDLMYRKRAFVHWYVGEAMEEGEFSEAREDL 423          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA1_NEUCR (Tubulin alpha-A chain OS=Neurospora crassa GN=tba-1 PE=2 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 7.284e-22
Identity = 48/166 (28.92%), Postives = 88/166 (53.01%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMAS-------------TFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +H+ ++ +AP+ S     + +    ELT Q ++  N M   DPR+G+Y+  + ++RG +  ++    +  ++ K+S   VEW P   K  +    P  +  AS             + + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  266 VHYPLISYAPVISATKSAHESFKTSELTLQCFEPNNQMVVCDPRNGKYMAVALLYRGDVVPRDTSAAVAALKAKSSFNLVEWCPTGFKIGINHQKPMSVPTASPADGGLASVDRSVSMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 431          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.242e-21
Identity = 50/158 (31.65%), Postives = 87/158 (55.06%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSS--YFVEWIPNNVKSSVCDIPP------RGLSMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 436
            LHF +  +AP+ S+   ++  +TV  +T  ++   N+M    P  G+Y+    M+RG +  KE  + + N++N+ S    FV+W P   K  + +  P       G +MA T      + N+T+I ++F R++ +F  M+ ++AF+HWY GEGM+E E
Sbjct:  174 LHFVLCSYAPVISKEKSEHENITVDAITNSVFSENNIMAKCQPHLGKYMACCLMYRGNIVPKEAQKAVQNIRNEKSKTVSFVDWSPTGFKCGINNSKPTTVLGENGDNMARTEKSVCMLSNTTAISQVFSRINHKFDLMYIKRAFVHWYVGEGMEEGE 331          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans GN=tubB PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.768e-21
Identity = 47/161 (29.19%), Postives = 89/161 (55.28%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSV-----CDIPPRGLS---MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +H+ ++ +AP+ S     + +  V +LT Q  +  N M   DPR+G+Y+  + ++RG    ++  + + +++ K S   VEW P   K  +       +P   L+    + + + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  267 IHYPLISYAPVISSNRSSHESFKVQDLTLQCAEPNNQMVVCDPRNGKYMAVALLYRGDCVPRDCTQAIASLKAKASFNLVEWCPTGFKVGINYQKPARVPGSELAPVDRSVSMLSNTTAISEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 427          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.166e-21
Identity = 53/161 (32.92%), Postives = 94/161 (58.39%), Query Frame = 2
Query:    5 HFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADP-RHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR---GLSMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            HF M+ +AP+ +      + L+V ELT  ++D  ++M   D    G++++   M+RG +S++EV+  +  ++ +N+  FV W P + K  +   P     G S AST      I N T++ ++F++V++ F  MF ++AF+H Y GEGM+E EFT+A  ++
Sbjct:  271 HFAMMSYAPIVTPEKAIRQTLSVQELTSSLFDPNSLMIQCDDINKGKFMSCCMMYRGDVSSREVNLAVSGIKKQNTVPFVGWCPCSFKCGINSQPATAVPGSSYASTARSACMIANHTAMCQVFQKVNQNFDLMFGKRAFVHHYVGEGMEENEFTDARQDL 431          
The following BLAST results are available for this feature:
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBA3E_HUMAN2.957e-2331.68Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E P... [more]
TBA3_CHICK6.588e-2331.06Tubulin alpha-3 chain (Fragment) OS=Gallus gallus ... [more]
TBAL3_HUMAN1.468e-2231.68Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBA... [more]
TBAA_SCHCO3.269e-2228.57Tubulin alpha-1A chain OS=Schizophyllum commune GN... [more]
TBA2_CHICK4.270e-2230.43Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBAB_SCHCO5.577e-2231.52Tubulin alpha-1B chain OS=Schizophyllum commune GN... [more]
TBA1_NEUCR7.284e-2228.92Tubulin alpha-A chain OS=Neurospora crassa GN=tba-... [more]
TBA_DICPU1.242e-2131.65Tubulin alpha chain (Fragment) OS=Dictyostelium pu... [more]
TBA2_EMENI2.768e-2129.19Tubulin alpha-2 chain OS=Emericella nidulans GN=tu... [more]
TBA1_ENTHI6.166e-2132.92Tubulin alpha-1 chain OS=Entamoeba histolytica GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00003 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00003 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622912 ID=BQ622912; Name=BQ622912; organism=Citrus sinensis; type=EST; length=464bp
CCTGCACTTCTTCATGGTTGGGTTTGCTCCCCTTACCTCCCGTGGTTCTC
AGCAGTACCGTGCCTTGACAGTCCCAGAACTTACCCAACAAATGTGGGAT
GCCAAGAACATGATGTGTGCTGCCGACCCAAGGCATGGTCGTTACCTCAC
TGCTTCTGCCATGTTCAGGGGTAAAATGAGCACCAAGGAAGTTGACGAGC
AGATGATCAATGTTCAAAACAAAAACTCTTCCTACTTTGTGGAGTGGATT
CCAAACAATGTGAAGTCCAGTGTTTGTGACATTCCTCCCAGAGGTCTCTC
CATGGCATCCACCTTCATCGGGAACTCAACATCCATCCAAGAAATGTTCC
GAAGAGTGAGTGAGCAATTCACAGCTATGTTTAGGAGAAAGGCTTTCCTT
CACTGGTACACTGGTGAAGGGATGGATGAAATGGAGTTCACTGAAGCTGA
GAGCAATATGAATG
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