BQ622912

Overview
NameBQ622912
Unique NameBQ622912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9861 contig Csv1_Contig9861:859..1322. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBAL3_MOUSE (Tubulin alpha chain-like 3 OS=Mus musculus GN=Tubal3 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.374e-20
Identity = 49/161 (30.43%), Postives = 84/161 (52.17%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +   AP+ S        L+V ++T   ++  N +   DPR G+Y+    ++RG +  K+V+E +  ++++ S  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ +KAFLHWY  EGM+  EF EA  ++
Sbjct:  272 IHFPITALAPIISAEKAYQEQLSVSDVTASCFEVSNQLVKCDPRLGKYMACCLLYRGDVVPKDVNEAIAAMKSRTSVQFVDWCPTGFKVGINYQPPAVVPGGDLARVQRAVCMLSNTTAIVEAWARLDHKFDLMYAKKAFLHWYITEGMELGEFVEAREDL 432          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 2.343e-20
Identity = 48/161 (29.81%), Postives = 85/161 (52.80%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSV---CDIPPRGLSMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +HF +  +AP+ S     +  L+V ++T   ++  N M   DP  G+Y+    ++RG +  K+V+  + +V+ K    FV+W P   K  +     I   G  +A        + N+T+I E + R+  +F  M+ ++AF+HW+ GEGM+E EF EA  ++
Sbjct:  268 IHFPLATYAPVISADRAHHEPLSVQDITHMCFEKANQMVKCDPSAGKYMAVCLLYRGDVVPKDVNAAISSVKAKRGINFVDWCPTGFKVGINYQAPITVEGGDLAKVHRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWFVGEGMEEGEFMEARDDL 428          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA_LYTPI (Tubulin alpha chain (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.519e-19
Identity = 43/135 (31.85%), Postives = 74/135 (54.81%), Query Frame = 2
Query:   80 LTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:    1 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 135          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.519e-19
Identity = 45/153 (29.41%), Postives = 82/153 (53.59%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMA-------STFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 439
            +HF +  ++P+ S G   + + +V E+T   ++  N M   DPR+G+Y+    ++RG +  K+V      ++ K +  FV+  P   K  +C  PP  +          +  + N+T+I E +  +S +F  ++ ++AF+HWY GEGM+E EF
Sbjct:  266 IHFPLASYSPVVSAGKASHESNSVMEVTIVCFEPNNQMVKCDPRNGKYMATCLLYRGDVVPKDVHAVAATLKTKRTVQFVDLQPTGFKIGICYQPPTMVPNGDLAKVNRACMLSNTTAISEAWTALSHKFDLIYSKRAFVHWYVGEGMEEGEF 418          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA_ENCHE (Tubulin alpha chain (Fragment) OS=Encephalitozoon hellem GN=TUB1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.214e-17
Identity = 42/142 (29.58%), Postives = 77/142 (54.23%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGL--------SMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLH 403
            +HF +V ++P+ S+    +  L+V E+T   ++ ++ M   D R G+Y+    +FRG ++ K+ +    NV+ K ++ FVEW P   K  +    P  L        S A   + N+T+I E ++R++ +F  MF ++AF+H
Sbjct:  239 IHFPLVAYSPMLSKEKAAHEKLSVQEITNACFEPQSQMVRCDTRKGKYMACCLLFRGDVNPKDANTATANVKAKRTNQFVEWCPTGFKVGINSRKPTVLDGEAMAEVSRAVCALSNTTAISEAWKRLNNKFDLMFSKRAFVH 380          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBA_GLOLA (Tubulin alpha chain OS=Glomerella lagenarium GN=TUB1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.203e-16
Identity = 45/166 (27.11%), Postives = 86/166 (51.81%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMAS------------TFIGNSTSIQEMFRRVS-EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 460
            +H+ ++ +AP+ S     + +  V +LT Q ++  N M   DPR+G+Y+  + ++RG    ++ +  +  ++ K+S   VEW P   K  +    P  +  A             + + N+T++ E + +    +F  M  ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  266 IHYPLISYAPVISGFKSAHESFKV-QLTFQCFEPNNQMVVCDPRNGKYMAVALLYRGDAVPRDCNAAIAALKAKSSFNLVEWCPTGFKLGINYQKPMAVPAAPGDGGLAPVDRSVSMLSNTTAMPEAWSKTGITKFDLMSAKRAFVHWYVGEGMEEGEFSEAREDL 430          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.738e-15
Identity = 43/155 (27.74%), Postives = 79/155 (50.97%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG-EGMDEMEFTEAESNMN 463
            LH+ +    PL +          + ++    +   + +  ADPRH  YL  + + RG +   ++   +  +  K +  FV W     K+S+C +PP G S +   + N+T ++  F  + E+FT ++++KA LH Y   +GM+E  FTEA S+++
Sbjct:  296 LHYLVSSLTPLYTLADVNIPPRRLDQMFSDAFSKDHQLIQADPRHSLYLACALIVRGNVQISDLRRNIERL--KPALQFVSWNQEGWKTSLCSVPPVGHSHSLLALANNTCVKPTFMELRERFTRLYKKKAHLHHYLQVDGMEESTFTEAVSSLS 448          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.871e-15
Identity = 44/155 (28.39%), Postives = 78/155 (50.32%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG-EGMDEMEFTEAESNMN 463
            LH+ +    PL +          + ++    +   + +  ADP+H  YL  + M RG +   ++   +  +  K S  FV W     K+S+C +PP G S +   + N+T ++  F  + E+F  ++++KA LH Y   EGM+E  FTEA S+++
Sbjct:  296 LHYLVSSLTPLYTLTDVNIPPRRLDQMFSDAFSKDHQLLRADPKHSLYLACALMVRGNVQISDLRRNIERL--KPSLQFVSWNQEGWKTSLCSVPPVGHSHSLLALANNTCVKPTFMELKERFMRLYKKKAHLHHYLQVEGMEESCFTEAVSSLS 448          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBG_PLAFO (Tubulin gamma chain OS=Plasmodium falciparum (isolate NF54) GN=G-TUB PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.988e-11
Identity = 40/160 (25.00%), Postives = 80/160 (50.00%), Query Frame = 2
Query:    5 HFFMVGFAPLT-SRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLS---MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGM-----DEMEFTEAESN 457
            HF +  + P+T  +     +  TV ++ +++   KN+M +A  R G Y++   + RG+    +V + +  ++++    F++W P +++ ++    P  +S   +    + N TSI  +F R   QF  +++R+AFL  Y  E M      +  F E ES+
Sbjct:  268 HFLITSYTPITIDKHISNVQKTTVLDVMKRLLHTKNIMVSAPVRRGMYISILNIIRGETDPTQVHKGLQRIRDRKLVNFIKWNPASIQVTLAKQSPHVVSQHKVCGLMMANHTSISTLFERCVTQFDRLYKRRAFLENYKKESMFSSADGQGNFEEMESS 427          
The following BLAST results are available for this feature:
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBAL3_MOUSE1.374e-2030.43Tubulin alpha chain-like 3 OS=Mus musculus GN=Tuba... [more]
TBA8_CAEEL2.343e-2029.81Tubulin alpha-8 chain OS=Caenorhabditis elegans GN... [more]
TBA_LYTPI1.519e-1931.85Tubulin alpha chain (Fragment) OS=Lytechinus pictu... [more]
TBA_AJECA1.519e-1929.41Tubulin alpha chain (Fragment) OS=Ajellomyces caps... [more]
TBA_ENCHE9.214e-1729.58Tubulin alpha chain (Fragment) OS=Encephalitozoon ... [more]
TBA_GLOLA1.203e-1627.11Tubulin alpha chain OS=Glomerella lagenarium GN=TU... [more]
TBE_MOUSE1.738e-1527.74Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBE_HUMAN3.871e-1528.39Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=... [more]
TBG_PLAFO1.988e-1125.00Tubulin gamma chain OS=Plasmodium falciparum (isol... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00003 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00003 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622912 ID=BQ622912; Name=BQ622912; organism=Citrus sinensis; type=EST; length=464bp
CCTGCACTTCTTCATGGTTGGGTTTGCTCCCCTTACCTCCCGTGGTTCTC
AGCAGTACCGTGCCTTGACAGTCCCAGAACTTACCCAACAAATGTGGGAT
GCCAAGAACATGATGTGTGCTGCCGACCCAAGGCATGGTCGTTACCTCAC
TGCTTCTGCCATGTTCAGGGGTAAAATGAGCACCAAGGAAGTTGACGAGC
AGATGATCAATGTTCAAAACAAAAACTCTTCCTACTTTGTGGAGTGGATT
CCAAACAATGTGAAGTCCAGTGTTTGTGACATTCCTCCCAGAGGTCTCTC
CATGGCATCCACCTTCATCGGGAACTCAACATCCATCCAAGAAATGTTCC
GAAGAGTGAGTGAGCAATTCACAGCTATGTTTAGGAGAAAGGCTTTCCTT
CACTGGTACACTGGTGAAGGGATGGATGAAATGGAGTTCACTGAAGCTGA
GAGCAATATGAATG
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