BQ622924

Overview
NameBQ622924
Unique NameBQ622924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622924_ssr546 microsatellite BQ622924_ssr546:546..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3539 contig Csv1_Contig3539:145..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_MYCS5 (30S ribosomal protein S9 OS=Mycoplasma synoviae (strain 53) GN=rpsI PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.337e-28
Identity = 66/124 (53.23%), Postives = 86/124 (69.35%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            G GRRK ++ARV+++ G G+F IN R A+EYL  + L+L+    P V       +D FV   GGGL+GQA AI LG+ARALL  S D+R+ LK EG+LTRD+R+ ERKK GL  AR+A Q+SKR
Sbjct:    9 GLGRRKSSVARVIIRPGKGEFHINKRPAREYLTSD-LYLKDANQPFVLTETFQKFDTFVNVKGGGLNGQAGAIRLGIARALLHASPDYRTKLKAEGMLTRDARIKERKKPGLRAARRARQFSKR 131          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_MYCPU (30S ribosomal protein S9 OS=Mycoplasma pulmonis GN=rpsI PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.337e-28
Identity = 65/124 (52.42%), Postives = 91/124 (73.39%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            G GRRK ++ARV+L +G+GKF IN R+AKEYL+ + ++++    P        ++D+ V   GGGL+GQA AI LG+ARALL++S D+RS LK+  +LTR+++V ERKK GL KARKA Q+SKR
Sbjct:   14 GLGRRKSSVARVILLKGSGKFTINKREAKEYLKSD-IYIKDALQPFDLTQTNNTFDIRVTVRGGGLAGQAGAIRLGIARALLEISADYRSVLKEAKMLTRNTKVKERKKPGLRKARKARQFSKR 136          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_MYCPA (30S ribosomal protein S9 OS=Mycobacterium paratuberculosis GN=rpsI PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.337e-28
Identity = 68/122 (55.74%), Postives = 80/122 (65.57%), Query Frame = 2
Query:  116 GRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GRRK A+ RV L  GTGKF +N R  + Y   N +  Q +K PLVT+     +D++   HGGG SGQA A+ LG+ARAL+  S D R  LKK G LTRD R  ERKK GL KARKAPQYSKR
Sbjct:   46 GRRKEAVVRVRLVPGTGKFNLNGRTLEGYFP-NKVHQQLVKAPLVTVDRVDGFDIYAHLHGGGPSGQAGALRLGIARALILASPDDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR 166          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_MYCMO (30S ribosomal protein S9 OS=Mycoplasma mobile GN=rpsI PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.337e-28
Identity = 68/124 (54.84%), Postives = 87/124 (70.16%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            G GRRK + ARV+L+ G G+F+IN R A++YL  + L    ++ P+V    +  +D+ V   GGGLSGQA AI LG+ARALL+VS D R  LK  G+LTRD+RV ERKK GL KARKA Q+SKR
Sbjct:    8 GLGRRKSSSARVILRPGKGEFLINKRVARDYLMSDILLKDALQ-PIVISDQKEKFDITVNVRGGGLSGQAGAIRLGIARALLEVSVDFRKNLKTAGMLTRDARVKERKKPGLKKARKARQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_BACSU (30S ribosomal protein S9 OS=Bacillus subtilis GN=rpsI PE=1 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 5.337e-28
Identity = 65/125 (52.00%), Postives = 87/125 (69.60%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK ++ARV L  G G+ ++N R+  E++    L ++ IK PL       +YDV V  HGGGLSGQA AI  G+ARALL+   ++R+ LK+ GLLTRD+R+ ERKK GL  AR+APQ+SKR
Sbjct:    7 YGTGRRKSSVARVRLVPGEGRIVVNNREISEHIPSAAL-IEDIKQPLTLTETAGTYDVLVNVHGGGLSGQAGAIRHGIARALLEADPEYRTTLKRAGLLTRDARMKERKKYGLKGARRAPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_BACLD (30S ribosomal protein S9 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rpsI PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.337e-28
Identity = 66/125 (52.80%), Postives = 86/125 (68.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK ++ARV L  G G+ I+N R+  E++    L ++ IK PL       +YDV V  HGGG SGQA AI  G+ARALL+   ++RS LK+ GLLTRD+R+ ERKK GL  AR+APQ+SKR
Sbjct:    7 YGTGRRKSSVARVRLVPGEGRIIVNNREISEHIPSAAL-IEDIKQPLTLTETAGTYDVLVNVHGGGFSGQAGAIRHGIARALLEADPEYRSTLKRAGLLTRDARMKERKKYGLKGARRAPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_LISMH (30S ribosomal protein S9 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rpsI PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.970e-28
Identity = 69/125 (55.20%), Postives = 86/125 (68.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK ++ARV L  G GK +IN RD ++Y+    L  + IK PLV      +YDV V  HGGG +GQA AI  GVARALL+V+ ++R  LK  GLLTRD R+ ERKK GL  AR+APQ+SKR
Sbjct:    7 YGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAAL-REVIKQPLVATETLGNYDVLVNVHGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAGLLTRDPRMKERKKYGLKGARRAPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_LISMF (30S ribosomal protein S9 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rpsI PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.970e-28
Identity = 69/125 (55.20%), Postives = 86/125 (68.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK ++ARV L  G GK +IN RD ++Y+    L  + IK PLV      +YDV V  HGGG +GQA AI  GVARALL+V+ ++R  LK  GLLTRD R+ ERKK GL  AR+APQ+SKR
Sbjct:    7 YGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAAL-REVIKQPLVATETLGNYDVLVNVHGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAGLLTRDPRMKERKKYGLKGARRAPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_LISMC (30S ribosomal protein S9 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rpsI PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.970e-28
Identity = 69/125 (55.20%), Postives = 86/125 (68.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK ++ARV L  G GK +IN RD ++Y+    L  + IK PLV      +YDV V  HGGG +GQA AI  GVARALL+V+ ++R  LK  GLLTRD R+ ERKK GL  AR+APQ+SKR
Sbjct:    7 YGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAAL-REVIKQPLVATETLGNYDVLVNVHGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAGLLTRDPRMKERKKYGLKGARRAPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_LISIN (30S ribosomal protein S9 OS=Listeria innocua GN=rpsI PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.970e-28
Identity = 69/125 (55.20%), Postives = 86/125 (68.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK ++ARV L  G GK +IN RD ++Y+    L  + IK PLV      +YDV V  HGGG +GQA AI  GVARALL+V+ ++R  LK  GLLTRD R+ ERKK GL  AR+APQ+SKR
Sbjct:    7 YGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAAL-REVIKQPLVATETLGNYDVLVNVHGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAGLLTRDPRMKERKKYGLKGARRAPQFSKR 130          
The following BLAST results are available for this feature:
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_MYCS55.337e-2853.2330S ribosomal protein S9 OS=Mycoplasma synoviae (s... [more]
RS9_MYCPU5.337e-2852.4230S ribosomal protein S9 OS=Mycoplasma pulmonis GN... [more]
RS9_MYCPA5.337e-2855.7430S ribosomal protein S9 OS=Mycobacterium paratube... [more]
RS9_MYCMO5.337e-2854.8430S ribosomal protein S9 OS=Mycoplasma mobile GN=r... [more]
RS9_BACSU5.337e-2852.0030S ribosomal protein S9 OS=Bacillus subtilis GN=r... [more]
RS9_BACLD5.337e-2852.8030S ribosomal protein S9 OS=Bacillus licheniformis... [more]
RS9_LISMH6.970e-2855.2030S ribosomal protein S9 OS=Listeria monocytogenes... [more]
RS9_LISMF6.970e-2855.2030S ribosomal protein S9 OS=Listeria monocytogenes... [more]
RS9_LISMC6.970e-2855.2030S ribosomal protein S9 OS=Listeria monocytogenes... [more]
RS9_LISIN6.970e-2855.2030S ribosomal protein S9 OS=Listeria innocua GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00015 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622924 ID=BQ622924; Name=BQ622924; organism=Citrus sinensis; type=EST; length=670bp
ACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAACTG
ACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGGCTCAA
ACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGTCCT
CCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGGAAT
ATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTGGTA
ACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGGTGG
CGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTGCAT
TGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGCCTT
CTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCATAA
AGCCCGCAAAGCCCCACAGTATTCCAAACGTTGAGGCCAGAATTACAGTG
TGATGGACTGTTACCCGTAGATCTATTTTCTGCTTGTATCTCTGAATTAT
TATTATTATTATTATTTTTGGTTTAACATTTTATGTTTGGAGTTTTGTAC
TTCAGTTCCGGGTATCATGGAATCATAAACCATTTTTGATAAAAAAAACC
TAACAAAACAACTACAAAAA
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