BQ622924

Overview
NameBQ622924
Unique NameBQ622924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622924_ssr546 microsatellite BQ622924_ssr546:546..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3539 contig Csv1_Contig3539:145..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_SYNWW (30S ribosomal protein S9 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rpsI PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.649e-27
Identity = 65/125 (52.00%), Postives = 85/125 (68.00%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A+ARV L  G G  IIN R  +++       L  ++ PLV    +  +D+  + +GGG+SGQA AI LG+ARALLK + D ++ L++ G LTRD R+ ERKK GLHKARKAPQYSKR
Sbjct:    7 WGTGRRKEAVARVRLVPGEGNIIINNRSFEDFFPNQTSRL-IVQQPLVLTAMQGRFDIICRVNGGGVSGQAGAIQLGIARALLKANPDIKAMLRRSGFLTRDPRMKERKKYGLHKARKAPQYSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_STACT (30S ribosomal protein S9 OS=Staphylococcus carnosus (strain TM300) GN=rpsI PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.649e-27
Identity = 65/124 (52.42%), Postives = 83/124 (66.94%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK ++ARV L  G G   +N +D +EYL    L L  +  P      + +YDV V  HGGG +GQAQAI  G+ARALL+   ++RS LK+ GLLTRD R+ ERKK GL KAR++PQ+SKR
Sbjct:    8 GTGRRKNSVARVRLVPGEGNITVNGKDVREYLPFESLILD-LNQPFEVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRSSLKRAGLLTRDPRMKERKKPGLKKARRSPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_RENSM (30S ribosomal protein S9 OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=rpsI PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.649e-27
Identity = 72/132 (54.55%), Postives = 90/132 (68.18%), Query Frame = 2
Query:   95 AQTIFGT--GRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDH-RSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            A T+ G   GRRK AIARV +  GTGK+I+N R+  +Y   N L  Q +  P   L  + +YDV  +  GGG SGQA A+ LGVAR+L ++  D+ R+ LKK G LTRD+RV+ERKKAGL KARKAPQYSKR
Sbjct:   37 ALTVSGAAVGRRKEAIARVRVTPGTGKWIVNGRELADYFP-NKLHQQEVNEPFKILDLDGAYDVAARISGGGPSGQAGALRLGVARSLNEIDVDNNRATLKKAGFLTRDARVIERKKAGLKKARKAPQYSKR 167          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_STAHJ (30S ribosomal protein S9 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsI PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.459e-27
Identity = 65/124 (52.42%), Postives = 82/124 (66.13%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK ++ARV L  G G   +N RD +EYL    L L  +  P      + +YDV V  HGGG +GQAQAI  G+ARALL+   ++R  LK+ GLLTRD R+ ERKK GL KAR++PQ+SKR
Sbjct:    8 GTGRRKNSVARVRLVPGEGNITVNERDVREYLPFESLILD-LNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKKARRSPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_NATTJ (30S ribosomal protein S9 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rpsI PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.459e-27
Identity = 67/125 (53.60%), Postives = 82/125 (65.60%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            FGTGRRK ++ARV L  G GK ++N +   +Y  G       IK PL T+  E  +DV V   GGG SGQA+AI  G+ARAL+K   + R  LKKEG LTRD R+ ERKK GL KAR+APQ+SKR
Sbjct:    9 FGTGRRKTSVARVRLVPGNGKIVVNNKAMDDYF-GLETLKAIIKQPLQTVEMEDKFDVLVNVRGGGHSGQAEAIRHGIARALVKADGELRPVLKKEGYLTRDPRMKERKKYGLRKARRAPQFSKR 132          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_AERS4 (30S ribosomal protein S9 OS=Aeromonas salmonicida (strain A449) GN=rpsI PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.459e-27
Identity = 61/130 (46.92%), Postives = 85/130 (65.38%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            A    +GTGRRK + ARV ++ G+GK +IN R  ++Y  G P     ++ PL  +      D+++  +GGG+SGQA AI  G+ RAL++  +  R+ L+K G +TRD+R VERKK GLHKARK PQYSKR
Sbjct:    2 AENQYYGTGRRKSSTARVFIKAGSGKIVINQRSLEQYF-GRPTARMVVRQPLELVEMTEKLDLYITVNGGGISGQAGAIRHGITRALMQYDETLRAELRKAGFVTRDARKVERKKVGLHKARKRPQYSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_MYCUA (30S ribosomal protein S9 OS=Mycobacterium ulcerans (strain Agy99) GN=rpsI PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.518e-27
Identity = 68/122 (55.74%), Postives = 80/122 (65.57%), Query Frame = 2
Query:  116 GRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GRRK A+ RV L  G+GKF +N R  + Y   N +  Q IK PLVT+    SYD+F   HGGG SGQA A+ LG+ARAL+  + + R  LKK   LTRD R  ERKK GL KARKAPQYSKR
Sbjct:   32 GRRKEAVVRVRLVPGSGKFDLNGRSLEAYFP-NKVHQQLIKAPLVTVDRLESYDIFALLHGGGPSGQAGALRLGIARALIVANPEDRPALKKACFLTRDPRATERKKYGLKKARKAPQYSKR 152          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_THEPX (30S ribosomal protein S9 OS=Thermoanaerobacter sp. (strain X514) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.901e-27
Identity = 67/125 (53.60%), Postives = 83/125 (66.40%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A+ARV L  G G  IIN R  +EY   + L    +K PL+       +DV+ K  GGGL+GQA A+ LG+ARAL+KV  + R  LKK G LTRD R+ ER+K GL KARKAPQ+SKR
Sbjct:    7 YGTGRRKEAVARVRLMPGKGNIIINNRPLEEYFTLDTLKYT-VKQPLILTETIDKFDVYAKVSGGGLTGQAGAVRLGIARALVKVDSELRPILKKAGFLTRDPRMKERRKYGLKKARKAPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_THEP3 (30S ribosomal protein S9 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.901e-27
Identity = 67/125 (53.60%), Postives = 83/125 (66.40%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A+ARV L  G G  IIN R  +EY   + L    +K PL+       +DV+ K  GGGL+GQA A+ LG+ARAL+KV  + R  LKK G LTRD R+ ER+K GL KARKAPQ+SKR
Sbjct:    7 YGTGRRKEAVARVRLMPGKGNIIINNRPLEEYFTLDTLKYT-VKQPLILTETIDKFDVYAKVSGGGLTGQAGAVRLGIARALVKVDSELRPILKKAGFLTRDPRMKERRKYGLKKARKAPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_CLOPS (30S ribosomal protein S9 OS=Clostridium perfringens (strain SM101 / Type A) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.901e-27
Identity = 66/124 (53.23%), Postives = 83/124 (66.94%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK ++ARV L  G G+ I+N R+ + Y     L +  +  PLV    +  YDV V  HGGGLSGQA AI  G++RALLK  ++ R  LKK G LTRD R+VERKK GL KAR++PQ+SKR
Sbjct:    8 GTGRRKKSVARVRLVPGEGRVIVNNREIETYFGLETLRV-VVNQPLVLTETKDKYDVLVNVHGGGLSGQAGAIRHGISRALLKADENLRPELKKAGFLTRDPRMVERKKCGLKKARRSPQFSKR 130          
The following BLAST results are available for this feature:
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_SYNWW2.649e-2752.0030S ribosomal protein S9 OS=Syntrophomonas wolfei ... [more]
RS9_STACT2.649e-2752.4230S ribosomal protein S9 OS=Staphylococcus carnosu... [more]
RS9_RENSM2.649e-2754.5530S ribosomal protein S9 OS=Renibacterium salmonin... [more]
RS9_STAHJ3.459e-2752.4230S ribosomal protein S9 OS=Staphylococcus haemoly... [more]
RS9_NATTJ3.459e-2753.6030S ribosomal protein S9 OS=Natranaerobius thermop... [more]
RS9_AERS43.459e-2746.9230S ribosomal protein S9 OS=Aeromonas salmonicida ... [more]
RS9_MYCUA4.518e-2755.7430S ribosomal protein S9 OS=Mycobacterium ulcerans... [more]
RS9_THEPX5.901e-2753.6030S ribosomal protein S9 OS=Thermoanaerobacter sp.... [more]
RS9_THEP35.901e-2753.6030S ribosomal protein S9 OS=Thermoanaerobacter pse... [more]
RS9_CLOPS5.901e-2753.2330S ribosomal protein S9 OS=Clostridium perfringen... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00015 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622924 ID=BQ622924; Name=BQ622924; organism=Citrus sinensis; type=EST; length=670bp
ACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAACTG
ACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGGCTCAA
ACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGTCCT
CCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGGAAT
ATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTGGTA
ACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGGTGG
CGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTGCAT
TGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGCCTT
CTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCATAA
AGCCCGCAAAGCCCCACAGTATTCCAAACGTTGAGGCCAGAATTACAGTG
TGATGGACTGTTACCCGTAGATCTATTTTCTGCTTGTATCTCTGAATTAT
TATTATTATTATTATTTTTGGTTTAACATTTTATGTTTGGAGTTTTGTAC
TTCAGTTCCGGGTATCATGGAATCATAAACCATTTTTGATAAAAAAAACC
TAACAAAACAACTACAAAAA
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