BQ622924

Overview
NameBQ622924
Unique NameBQ622924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622924_ssr546 microsatellite BQ622924_ssr546:546..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3539 contig Csv1_Contig3539:145..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_CLOPE (30S ribosomal protein S9 OS=Clostridium perfringens GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.901e-27
Identity = 66/124 (53.23%), Postives = 83/124 (66.94%), Query Frame = 2 
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK ++ARV L  G G+ I+N R+ + Y     L +  +  PLV    +  YDV V  HGGGLSGQA AI  G++RALLK  ++ R  LKK G LTRD R+VERKK GL KAR++PQ+SKR
Sbjct:    8 GTGRRKKSVARVRLVPGEGRVIVNNREIETYFGLETLRV-VVNQPLVLTETKDKYDVLVNVHGGGLSGQAGAIRHGISRALLKADENLRPELKKAGFLTRDPRMVERKKCGLKKARRSPQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_CLOP1 (30S ribosomal protein S9 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.901e-27
Identity = 66/124 (53.23%), Postives = 83/124 (66.94%), Query Frame = 2 
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK ++ARV L  G G+ I+N R+ + Y     L +  +  PLV    +  YDV V  HGGGLSGQA AI  G++RALLK  ++ R  LKK G LTRD R+VERKK GL KAR++PQ+SKR
Sbjct:    8 GTGRRKKSVARVRLVPGEGRVIVNNREIETYFGLETLRV-VVNQPLVLTETKDKYDVLVNVHGGGLSGQAGAIRHGISRALLKADENLRPELKKAGFLTRDPRMVERKKCGLKKARRSPQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_CLOBM (30S ribosomal protein S9 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.901e-27
Identity = 65/125 (52.00%), Postives = 83/125 (66.40%), Query Frame = 2 
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            FGTGRRK ++ARV L  G GK IIN RD + Y     L +  +  PLV    +  YDV V  HGGG +GQA A+  G++RAL+K  ++ +S LKK G LTRD R+ ERKK GL KAR++PQ+SKR
Sbjct:    7 FGTGRRKKSVARVRLVAGDGKVIINNRDIENYFPIETLRV-IVNQPLVLTETKDKYDVLVNVHGGGFTGQAGAVRHGISRALVKADENMKSSLKKAGFLTRDPRMKERKKYGLKKARRSPQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_CLOBL (30S ribosomal protein S9 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.901e-27
Identity = 65/125 (52.00%), Postives = 83/125 (66.40%), Query Frame = 2 
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            FGTGRRK ++ARV L  G GK IIN RD + Y     L +  +  PLV    +  YDV V  HGGG +GQA A+  G++RAL+K  ++ +S LKK G LTRD R+ ERKK GL KAR++PQ+SKR
Sbjct:    7 FGTGRRKKSVARVRLVAGDGKVIINNRDIENYFPIETLRV-IVNQPLVLTETKDKYDVLVNVHGGGFTGQAGAVRHGISRALVKADENMKSSLKKAGFLTRDPRMKERKKYGLKKARRSPQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_CLOBK (30S ribosomal protein S9 OS=Clostridium botulinum (strain Okra / Type B1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.901e-27
Identity = 65/125 (52.00%), Postives = 83/125 (66.40%), Query Frame = 2 
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            FGTGRRK ++ARV L  G GK IIN RD + Y     L +  +  PLV    +  YDV V  HGGG +GQA A+  G++RAL+K  ++ +S LKK G LTRD R+ ERKK GL KAR++PQ+SKR
Sbjct:    7 FGTGRRKKSVARVRLVAGDGKVIINNRDIENYFPIETLRV-IVNQPLVLTETKDKYDVLVNVHGGGFTGQAGAVRHGISRALVKADENMKSSLKKAGFLTRDPRMKERKKYGLKKARRSPQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_CLOBJ (30S ribosomal protein S9 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.901e-27
Identity = 65/125 (52.00%), Postives = 83/125 (66.40%), Query Frame = 2 
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            FGTGRRK ++ARV L  G GK IIN RD + Y     L +  +  PLV    +  YDV V  HGGG +GQA A+  G++RAL+K  ++ +S LKK G LTRD R+ ERKK GL KAR++PQ+SKR
Sbjct:    7 FGTGRRKKSVARVRLVAGDGKVIINNRDIENYFPIETLRV-IVNQPLVLTETKDKYDVLVNVHGGGFTGQAGAVRHGISRALVKADENMKSSLKKAGFLTRDPRMKERKKYGLKKARRSPQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_CLOBH (30S ribosomal protein S9 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.901e-27
Identity = 65/125 (52.00%), Postives = 83/125 (66.40%), Query Frame = 2 
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            FGTGRRK ++ARV L  G GK IIN RD + Y     L +  +  PLV    +  YDV V  HGGG +GQA A+  G++RAL+K  ++ +S LKK G LTRD R+ ERKK GL KAR++PQ+SKR
Sbjct:    7 FGTGRRKKSVARVRLVAGDGKVIINNRDIENYFPIETLRV-IVNQPLVLTETKDKYDVLVNVHGGGFTGQAGAVRHGISRALVKADENMKSSLKKAGFLTRDPRMKERKKYGLKKARRSPQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_CLOB6 (30S ribosomal protein S9 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.901e-27
Identity = 65/125 (52.00%), Postives = 83/125 (66.40%), Query Frame = 2 
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            FGTGRRK ++ARV L  G GK IIN RD + Y     L +  +  PLV    +  YDV V  HGGG +GQA A+  G++RAL+K  ++ +S LKK G LTRD R+ ERKK GL KAR++PQ+SKR
Sbjct:    7 FGTGRRKKSVARVRLVAGDGKVIINNRDIENYFPIETLRV-IVNQPLVLTETKDKYDVLVNVHGGGFTGQAGAVRHGISRALVKADENMKSSLKKAGFLTRDPRMKERKKYGLKKARRSPQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_CLOB1 (30S ribosomal protein S9 OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.901e-27
Identity = 65/125 (52.00%), Postives = 83/125 (66.40%), Query Frame = 2 
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            FGTGRRK ++ARV L  G GK IIN RD + Y     L +  +  PLV    +  YDV V  HGGG +GQA A+  G++RAL+K  ++ +S LKK G LTRD R+ ERKK GL KAR++PQ+SKR
Sbjct:    7 FGTGRRKKSVARVRLVAGDGKVIINNRDIENYFPIETLRV-IVNQPLVLTETKDKYDVLVNVHGGGFTGQAGAVRHGISRALVKADENMKSSLKKAGFLTRDPRMKERKKYGLKKARRSPQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_STRGG (30S ribosomal protein S9 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.707e-27
Identity = 73/143 (51.05%), Postives = 89/143 (62.24%), Query Frame = 2 
Query:   59 KYVKSRLPGGFA-AQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDH-RSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +Y    L G F   Q   G GRRK AIARV +  GTGK+ IN R  ++Y   N +  Q +  P   L  +  YDV  +  GGG+SGQA A+ LGVAR+L +   D+ R+ LKK G L+RD R VERKKAGL KARKAPQYSKR
Sbjct:   34 EYTSESLAGRFGDPQPAAGLGRRKNAIARVRIVPGTGKWKINGRTLEDYFP-NKVHQQEVNEPFKVLELDGRYDVIARISGGGVSGQAGALRLGVARSLNEADVDNNRATLKKAGFLSRDDRAVERKKAGLKKARKAPQYSKR 175
The following BLAST results are available for this feature:
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_CLOPE5.901e-2753.2330S ribosomal protein S9 OS=Clostridium perfringen... [more]
RS9_CLOP15.901e-2753.2330S ribosomal protein S9 OS=Clostridium perfringen... [more]
RS9_CLOBM5.901e-2752.0030S ribosomal protein S9 OS=Clostridium botulinum ... [more]
RS9_CLOBL5.901e-2752.0030S ribosomal protein S9 OS=Clostridium botulinum ... [more]
RS9_CLOBK5.901e-2752.0030S ribosomal protein S9 OS=Clostridium botulinum ... [more]
RS9_CLOBJ5.901e-2752.0030S ribosomal protein S9 OS=Clostridium botulinum ... [more]
RS9_CLOBH5.901e-2752.0030S ribosomal protein S9 OS=Clostridium botulinum ... [more]
RS9_CLOB65.901e-2752.0030S ribosomal protein S9 OS=Clostridium botulinum ... [more]
RS9_CLOB15.901e-2752.0030S ribosomal protein S9 OS=Clostridium botulinum ... [more]
RS9_STRGG7.707e-2751.0530S ribosomal protein S9 OS=Streptomyces griseus s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00015 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622924 ID=BQ622924; Name=BQ622924; organism=Citrus sinensis; type=EST; length=670bp
ACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAACTG
ACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGGCTCAA
ACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGTCCT
CCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGGAAT
ATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTGGTA
ACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGGTGG
CGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTGCAT
TGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGCCTT
CTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCATAA
AGCCCGCAAAGCCCCACAGTATTCCAAACGTTGAGGCCAGAATTACAGTG
TGATGGACTGTTACCCGTAGATCTATTTTCTGCTTGTATCTCTGAATTAT
TATTATTATTATTATTTTTGGTTTAACATTTTATGTTTGGAGTTTTGTAC
TTCAGTTCCGGGTATCATGGAATCATAAACCATTTTTGATAAAAAAAACC
TAACAAAACAACTACAAAAA
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