BQ622924

Overview
NameBQ622924
Unique NameBQ622924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_PELTS (30S ribosomal protein S9 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.315e-26
Identity = 65/125 (52.00%), Postives = 80/125 (64.00%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK AIARV    G G+ IIN R   EY  G       ++ PL   G  + +D+  K  GGG+SGQA AI LG+ARAL++   + R  LKK G LTRD R+ ER+K GL KAR+APQYSKR
Sbjct:    7 YGTGRRKNAIARVFAMPGEGRIIINNRPLSEYF-GRKTLETIVRQPLDLTGTASRFDIMAKVQGGGISGQAGAIKLGIARALIQADPNLRPVLKKAGFLTRDPRMKERRKYGLKKARRAPQYSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_NOCFA (30S ribosomal protein S9 OS=Nocardia farcinica GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.315e-26
Identity = 64/122 (52.46%), Postives = 83/122 (68.03%), Query Frame = 2
Query:  116 GRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GRRK A+ RV L  GTG+F++N R  ++Y   N +  Q +K PLVT+    S+D+  +  GGG SGQA A+ L +ARAL++V+ + R  LK+ G LTRD R  ERKK GL KARKAPQYSKR
Sbjct:   47 GRRKEAVVRVRLVPGTGQFVLNGRSIEDYFP-NKVHQQLVKSPLVTVERTESFDIHARLVGGGPSGQAGALRLAIARALIEVTPEDRPALKRAGFLTRDPRATERKKYGLKKARKAPQYSKR 167          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_FINM2 (30S ribosomal protein S9 OS=Finegoldia magna (strain ATCC 29328) GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.315e-26
Identity = 68/124 (54.84%), Postives = 81/124 (65.32%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK ++ARV L  G+GKF IN +D  EY   + L +   K  L       SYDV V   GGG +GQA AI  GVARALL+V  D+R+ LK+ G LTRD R  ERKK GL KARK+PQ+SKR
Sbjct:    8 GTGRRKTSVARVTLVPGSGKFTINKKDISEYFNFDTLRV-IAKEALELTNNAESYDVTVNVKGGGYTGQAGAIRHGVARALLEVDPDYRAELKRAGFLTRDPRKKERKKYGLKKARKSPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RR9_CYACA (30S ribosomal protein S9, chloroplastic OS=Cyanidium caldarium GN=rps9 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.315e-26
Identity = 63/125 (50.40%), Postives = 79/125 (63.20%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            + TGRRKCA+A++    G GK ++N      Y Q N  + + I+ PL  L  E  YD  +   GGGLSGQA AI L +AR L  +S  +RS LK +  LTRDSR+ ERKK GL KARKAPQ+SKR
Sbjct:    4 YSTGRRKCAVAQLRFFSGNGKIVVNGCSLDYYFQHNSAFTKIIRSPLKLLNLELLYDFIIVVKGGGLSGQAGAIRLAIARVLAGLSPSNRSSLKSKRYLTRDSRIKERKKYGLKKARKAPQFSKR 128          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_UREU1 (30S ribosomal protein S9 OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.717e-26
Identity = 65/124 (52.42%), Postives = 85/124 (68.55%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            G GRRK +IARV L  G+GK  IN R  + Y   N L +Q +  PLV      +YDV+VK  GGG +GQA AI LG+ RAL++  +D ++ L+K GL+TRDSRV ERKK GL+ AR+APQ++KR
Sbjct:   11 GLGRRKSSIARVKLVPGSGKVFINDRQPENYFP-NKLVIQDMMQPLVLTKTAETYDVYVKVIGGGFNGQAGAIRLGITRALIQTREDLKTDLRKAGLVTRDSRVKERKKFGLYGARRAPQFTKR 133          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_THESQ (30S ribosomal protein S9 OS=Thermotoga sp. (strain RQ2) GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.717e-26
Identity = 64/128 (50.00%), Postives = 85/128 (66.41%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIIN---YRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A+ARV L+ G GK  +N   Y    +Y + NP W ++   PL        +D+ ++ +GGGLSGQ+ A+ LG+ARALL+  Q+ R  LKK  +LTRD R VERKK GL KAR+APQ+SKR
Sbjct:    8 YGTGRRKTAVARVYLRPGEGKVKVNGKEYESLNDYFK-NPAWTKHAIEPLEVTNTLGKFDLVIRVNGGGLSGQSGAVRLGIARALLQYDQNLRPVLKKYKMLTRDPREVERKKYGLKKARRAPQFSKR 134          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_THEMA (30S ribosomal protein S9 OS=Thermotoga maritima GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.717e-26
Identity = 64/128 (50.00%), Postives = 85/128 (66.41%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIIN---YRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A+ARV L+ G GK  +N   Y    +Y + NP W ++   PL        +D+ ++ +GGGLSGQ+ A+ LG+ARALL+  Q+ R  LKK  +LTRD R VERKK GL KAR+APQ+SKR
Sbjct:    8 YGTGRRKTAVARVYLRPGEGKVKVNGKEYESLNDYFK-NPAWTKHAIEPLEVTNTLGKFDLVIRVNGGGLSGQSGAVRLGIARALLQYDQNLRPVLKKYKMLTRDPREVERKKYGLKKARRAPQFSKR 134          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_STAAW (30S ribosomal protein S9 OS=Staphylococcus aureus (strain MW2) GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.717e-26
Identity = 64/124 (51.61%), Postives = 81/124 (65.32%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK ++ARV L  G G   +N RD +EYL    L L  +  P      + +YDV V  HGGG +GQAQAI  G+ARALL+   ++R  LK+ GLLTRD R+ ERKK GL  AR++PQ+SKR
Sbjct:    8 GTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILD-LNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_STAAT (30S ribosomal protein S9 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.717e-26
Identity = 64/124 (51.61%), Postives = 81/124 (65.32%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK ++ARV L  G G   +N RD +EYL    L L  +  P      + +YDV V  HGGG +GQAQAI  G+ARALL+   ++R  LK+ GLLTRD R+ ERKK GL  AR++PQ+SKR
Sbjct:   10 GTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILD-LNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR 132          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_STAAS (30S ribosomal protein S9 OS=Staphylococcus aureus (strain MSSA476) GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.717e-26
Identity = 64/124 (51.61%), Postives = 81/124 (65.32%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK ++ARV L  G G   +N RD +EYL    L L  +  P      + +YDV V  HGGG +GQAQAI  G+ARALL+   ++R  LK+ GLLTRD R+ ERKK GL  AR++PQ+SKR
Sbjct:    8 GTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILD-LNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR 130          
The following BLAST results are available for this feature:
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_PELTS1.315e-2652.0030S ribosomal protein S9 OS=Pelotomaculum thermopr... [more]
RS9_NOCFA1.315e-2652.4630S ribosomal protein S9 OS=Nocardia farcinica GN=... [more]
RS9_FINM21.315e-2654.8430S ribosomal protein S9 OS=Finegoldia magna (stra... [more]
RR9_CYACA1.315e-2650.4030S ribosomal protein S9, chloroplastic OS=Cyanidi... [more]
RS9_UREU11.717e-2652.4230S ribosomal protein S9 OS=Ureaplasma urealyticum... [more]
RS9_THESQ1.717e-2650.0030S ribosomal protein S9 OS=Thermotoga sp. (strain... [more]
RS9_THEMA1.717e-2650.0030S ribosomal protein S9 OS=Thermotoga maritima GN... [more]
RS9_STAAW1.717e-2651.6130S ribosomal protein S9 OS=Staphylococcus aureus ... [more]
RS9_STAAT1.717e-2651.6130S ribosomal protein S9 OS=Staphylococcus aureus ... [more]
RS9_STAAS1.717e-2651.6130S ribosomal protein S9 OS=Staphylococcus aureus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00015 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622924 ID=BQ622924; Name=BQ622924; organism=Citrus sinensis; type=EST; length=670bp
ACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAACTG
ACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGGCTCAA
ACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGTCCT
CCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGGAAT
ATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTGGTA
ACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGGTGG
CGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTGCAT
TGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGCCTT
CTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCATAA
AGCCCGCAAAGCCCCACAGTATTCCAAACGTTGAGGCCAGAATTACAGTG
TGATGGACTGTTACCCGTAGATCTATTTTCTGCTTGTATCTCTGAATTAT
TATTATTATTATTATTTTTGGTTTAACATTTTATGTTTGGAGTTTTGTAC
TTCAGTTCCGGGTATCATGGAATCATAAACCATTTTTGATAAAAAAAACC
TAACAAAACAACTACAAAAA
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