BQ622924

Overview
NameBQ622924
Unique NameBQ622924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RR9_OSTTA (30S ribosomal protein S9, chloroplastic OS=Ostreococcus tauri GN=rps9 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.607e-24
Identity = 62/124 (50.00%), Postives = 84/124 (67.74%), Query Frame = 2
Query:  113 TGRRKCAIARV-VLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            TGRRK A+A+V +   GTG   +N  DA++YLQG   +   +K P   L  + +YD+F++  GGGL+GQ+ AI LG ARAL  ++ ++R+PLK  G LTR +   ERKK GL KARKAPQ+SKR
Sbjct:    7 TGRRKRAVAQVRICSPGTGTIKVNQVDAEQYLQG--AYANILK-PFEKLQLDATYDIFIRTEGGGLTGQSDAIRLGCARALCMMNSEYRTPLKSAGFLTRIALKKERKKYGLKKARKAPQFSKR 127          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_SHISS (30S ribosomal protein S9 OS=Shigella sonnei (strain Ss046) GN=rpsI PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.099e-24
Identity = 58/130 (44.62%), Postives = 81/130 (62.31%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            A    +GTGRRK + ARV ++ G GK +IN R  ++Y  G       ++ PL  +      D+++   GGG+SGQA AI  G+ RAL++  +  RS L+K G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    2 AENQYYGTGRRKNSAARVFIKPGNGKIVINQRSLEQYF-GRETARMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_SHIFL (30S ribosomal protein S9 OS=Shigella flexneri GN=rpsI PE=3 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.099e-24
Identity = 57/130 (43.85%), Postives = 81/130 (62.31%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            A    +GTGRRK + ARV ++ G GK +IN R  ++Y  G       ++ P+  +      D+++   GGG+SGQA AI  G+ RAL++  +  RS L+K G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    2 AENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYF-GRETARMVVRQPMELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_CLAM3 (30S ribosomal protein S9 OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=rpsI PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.099e-24
Identity = 65/123 (52.85%), Postives = 82/123 (66.67%), Query Frame = 2
Query:  116 GRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDH-RSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GRRK AIARV L  G+G   +N R+  +Y   N L  Q +  P   L    SYDV  +  GGG SGQA A+ LG+ARAL ++ +++ R+ LKK G L+RD+RV ERKKAGL KARKAPQ+SKR
Sbjct:   40 GRRKQAIARVRLVPGSGSITVNGREFADYFP-NKLHQQLVNDPFKVLDLLGSYDVVARISGGGPSGQAGALRLGIARALNEIDEENNRAVLKKNGFLSRDARVKERKKAGLKKARKAPQFSKR 161          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_BREBN (30S ribosomal protein S9 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rpsI PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.099e-24
Identity = 65/125 (52.00%), Postives = 79/125 (63.20%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK ++ARV L  G G+ +IN R+   Y     L L  +K PLV       YDV V  +GGG +GQA AI  GVARALLK   + R  LK+ G LTRD R+ ERKK GL  AR+APQ+SKR
Sbjct:    7 YGTGRRKHSVARVRLVPGEGRIVINKREMDTYFGLETLKL-IVKQPLVLTETLGRYDVLVNVNGGGTTGQAGAIRHGVARALLKADPELRGALKRAGFLTRDPRMKERKKYGLKAARRAPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_VIBVY (30S ribosomal protein S9 OS=Vibrio vulnificus (strain YJ016) GN=rpsI PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.741e-24
Identity = 58/130 (44.62%), Postives = 80/130 (61.54%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            A    +GTGRRK + ARV ++ G+G  +IN R  +EY  G P     +K PL  +      D+++   GGG+SGQA AI  G+ RAL++  +  R  L+  G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    2 AENQYYGTGRRKSSAARVFIKPGSGNIVINKRALEEYF-GRPTSCMVVKQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRPALRAAGYVTRDARCVERKKVGLRKARRRPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_VIBVU (30S ribosomal protein S9 OS=Vibrio vulnificus GN=rpsI PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.741e-24
Identity = 58/130 (44.62%), Postives = 80/130 (61.54%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            A    +GTGRRK + ARV ++ G+G  +IN R  +EY  G P     +K PL  +      D+++   GGG+SGQA AI  G+ RAL++  +  R  L+  G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    2 AENQYYGTGRRKSSAARVFIKPGSGNIVINKRALEEYF-GRPTSCMVVKQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRPALRAAGYVTRDARCVERKKVGLRKARRRPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_VIBHB (30S ribosomal protein S9 OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=rpsI PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.741e-24
Identity = 59/130 (45.38%), Postives = 79/130 (60.77%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            A    +GTGRRK + ARV ++ G+G  +IN R   EY  G P     +K PL  +      D++V   GGG+SGQA AI  G+ RAL++  +  R  L+  G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    2 AENQYYGTGRRKSSAARVFIKPGSGNIVINKRSLDEYF-GRPTSRMVVKQPLELVELTEKLDLYVTVKGGGISGQAGAIRHGITRALMEYDESLRPTLRAAGYVTRDARCVERKKVGLRKARRRPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_CLOB8 (30S ribosomal protein S9 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rpsI PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.741e-24
Identity = 61/124 (49.19%), Postives = 81/124 (65.32%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK ++ARV L  G+GK ++N R+ + +     L +  +  PLV  G +  +DV V  HGGG +GQA AI  G+ARAL+K  +  +  LKK G LTRD R+ ERKK GL  AR+APQ+SKR
Sbjct:    8 GTGRRKKSVARVRLVPGSGKVLVNKREIENFFGLETLRV-IVNQPLVLTGTKDRFDVLVNVHGGGFTGQAGAIRHGIARALVKSDEALKPELKKAGFLTRDPRMKERKKYGLKAARRAPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_VIBPA (30S ribosomal protein S9 OS=Vibrio parahaemolyticus GN=rpsI PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24
Identity = 58/130 (44.62%), Postives = 79/130 (60.77%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            A    +GTGRRK + ARV ++ G+G  ++N R   EY  G P     +K PL  +      D++V   GGG+SGQA AI  G+ RAL++  +  R  L+  G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    2 AENQYYGTGRRKSSAARVFIKPGSGNIVVNKRSLDEYF-GRPTSRMVVKQPLELVELTEKLDLYVTVKGGGISGQAGAIRHGITRALMEYDESLRPALRAAGYVTRDARCVERKKVGLRKARRRPQFSKR 130          
The following BLAST results are available for this feature:
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR9_OSTTA1.607e-2450.0030S ribosomal protein S9, chloroplastic OS=Ostreoc... [more]
RS9_SHISS2.099e-2444.6230S ribosomal protein S9 OS=Shigella sonnei (strai... [more]
RS9_SHIFL2.099e-2443.8530S ribosomal protein S9 OS=Shigella flexneri GN=r... [more]
RS9_CLAM32.099e-2452.8530S ribosomal protein S9 OS=Clavibacter michiganen... [more]
RS9_BREBN2.099e-2452.0030S ribosomal protein S9 OS=Brevibacillus brevis (... [more]
RS9_VIBVY2.741e-2444.6230S ribosomal protein S9 OS=Vibrio vulnificus (str... [more]
RS9_VIBVU2.741e-2444.6230S ribosomal protein S9 OS=Vibrio vulnificus GN=r... [more]
RS9_VIBHB2.741e-2445.3830S ribosomal protein S9 OS=Vibrio harveyi (strain... [more]
RS9_CLOB82.741e-2449.1930S ribosomal protein S9 OS=Clostridium beijerinck... [more]
RS9_VIBPA3.580e-2444.6230S ribosomal protein S9 OS=Vibrio parahaemolyticu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00015 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622924 ID=BQ622924; Name=BQ622924; organism=Citrus sinensis; type=EST; length=670bp
ACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAACTG
ACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGGCTCAA
ACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGTCCT
CCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGGAAT
ATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTGGTA
ACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGGTGG
CGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTGCAT
TGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGCCTT
CTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCATAA
AGCCCGCAAAGCCCCACAGTATTCCAAACGTTGAGGCCAGAATTACAGTG
TGATGGACTGTTACCCGTAGATCTATTTTCTGCTTGTATCTCTGAATTAT
TATTATTATTATTATTTTTGGTTTAACATTTTATGTTTGGAGTTTTGTAC
TTCAGTTCCGGGTATCATGGAATCATAAACCATTTTTGATAAAAAAAACC
TAACAAAACAACTACAAAAA
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