BQ622924

Overview
NameBQ622924
Unique NameBQ622924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_ERWT9 (30S ribosomal protein S9 OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=rpsI PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24
Identity = 56/125 (44.80%), Postives = 80/125 (64.00%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK + ARV ++ G+G  +IN R  ++Y  G       ++ PL  L     +D+++   GGG+SGQA AI  G+ RAL++  +  R  L+K G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    7 YGTGRRKSSSARVFIKPGSGNIVINQRSLEQYF-GRETARMVVRQPLELLDMVGKFDLYITVKGGGISGQAGAIRHGITRALMEYDESLRGELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_CELJU (30S ribosomal protein S9 OS=Cellvibrio japonicus (strain Ueda107) GN=rpsI PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24
Identity = 61/125 (48.80%), Postives = 79/125 (63.20%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK + ARV ++ G+G   +N R   EY  G P+    ++ PL  +     +DV V   GGG  GQA AI  G+ RAL++  ++ RS L+K G +TRDSR VERKK GL KARK PQYSKR
Sbjct:    7 YGTGRRKTSTARVFIKAGSGVITVNDRPLDEYF-GRPVARMVVRQPLELVDLVEKFDVNVTVSGGGSFGQAGAIRHGLTRALMEYDENLRSELRKAGYVTRDSREVERKKVGLRKARKRPQYSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_MARMS (30S ribosomal protein S9 OS=Marinomonas sp. (strain MWYL1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.675e-24
Identity = 58/130 (44.62%), Postives = 80/130 (61.54%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +A   +GTGRRK + ARV L+ G+G  +IN R   +Y  G       ++ PL  +     +DV++   GGG+SGQA AI  G+ RAL++  +  R  L+  G +TRDSR VERKK GL KAR+ PQ+SKR
Sbjct:    2 SATQYYGTGRRKTSTARVFLKAGSGNLVINNRSIDQYF-GRETARMVVRQPLELVDATEKFDVYITVKGGGISGQAGAIRHGITRALMQYDETLRRTLRSAGFVTRDSREVERKKVGLRKARRRPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_ERWCT (30S ribosomal protein S9 OS=Erwinia carotovora subsp. atroseptica GN=rpsI PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.675e-24
Identity = 56/130 (43.08%), Postives = 81/130 (62.31%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            A    +GTGRRK + ARV ++ G+G  +IN R  ++Y  G       ++ PL  +     +D+++   GGG+SGQA AI  G+ RAL++  +  R  L+K G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    2 AENQYYGTGRRKSSAARVFIKPGSGNIVINQRSLEQYF-GRETARMVVRQPLELVDMVGKFDLYITVKGGGISGQAGAIRHGITRALMEYDESLRGELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_BORHD (30S ribosomal protein S9 OS=Borrelia hermsii (strain DAH) GN=rpsI PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.675e-24
Identity = 61/124 (49.19%), Postives = 79/124 (63.71%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK ++ARV ++EG G   IN RD   Y+Q   L    +  PLV       YD+++  +GGG+SGQA AI  G+ARAL  + ++H+  LK  G LTRD R VERKK G  KARK+ Q+SKR
Sbjct:   14 GTGRRKSSVARVYIREGKGDIKINSRDFDSYMQLEKLKTIALS-PLVLTNTLGKYDLYINIYGGGISGQAGAIRHGIARALFNLDEEHKMILKSNGFLTRDPRKVERKKFGKKKARKSFQFSKR 136          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_ALISL (30S ribosomal protein S9 OS=Aliivibrio salmonicida (strain LFI1238) GN=rpsI PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.675e-24
Identity = 59/130 (45.38%), Postives = 78/130 (60.00%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            A    +GTGRRK + ARV ++ GTG  +IN R  + Y  G P     +  PL  +      D+F+   GGG+SGQA AI  G+ RAL++  +  R  L+  G +TRD+R VERKK GL KARK PQ+SKR
Sbjct:    2 AENQYYGTGRRKSSAARVFIKPGTGNIVINKRSLEVYF-GRPTARMVVNQPLELVEMTDKLDLFITVSGGGISGQAGAIRHGITRALMQFDETLRPALRAAGYVTRDARCVERKKVGLRKARKKPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_PSEF5 (30S ribosomal protein S9 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rpsI PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 61/125 (48.80%), Postives = 76/125 (60.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A ARV L+ GTG   IN R    +  G       ++ PL        +D++V   GGG+SGQA AI  G+ RAL+   +  RS L+K G +TRD+R VERKK GL KARK PQYSKR
Sbjct:    7 YGTGRRKTATARVFLRPGTGNISINNRSLDNFF-GRETARMVVRQPLELTETVEKFDIYVTVIGGGVSGQAGAIRHGITRALMDYDETLRSALRKAGFVTRDAREVERKKVGLRKARKRPQYSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_NITSB (30S ribosomal protein S9 OS=Nitratiruptor sp. (strain SB155-2) GN=rpsI PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 58/126 (46.03%), Postives = 80/126 (63.49%), Query Frame = 2
Query:  104 IFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            I+ TG+RK A+A+V L +G+GK  +N     E+L G+      +++PL       S DV     GGG S QA A+  G+++AL  +  + RS LK  GLLTRD+RVVERKK G HKAR++PQ+SKR
Sbjct:    4 IYATGKRKTAVAKVWLTKGSGKITVNGMSLDEWLGGHEALKLRVRLPLALTKMSESVDVVATTLGGGYSAQADALKHGISKALCAMDDNLRSVLKPHGLLTRDARVVERKKYGKHKARRSPQFSKR 129          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_MAGSM (30S ribosomal protein S9 OS=Magnetococcus sp. (strain MC-1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 60/130 (46.15%), Postives = 79/130 (60.77%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            A +T   TG+RK ++ARV +  G+GK  IN +    Y  G P+    +  P      E  +DV V  HGGG+SGQA AI  G+++AL+   +  R  LKK G LTRD+R VERKK G HKARK+ Q+SKR
Sbjct:    2 AQETFNATGKRKESVARVRIVPGSGKVTINQKPMDVYF-GRPVLRMVVNQPFSVTEMENKFDVLVNVHGGGVSGQAGAIKHGISKALVDYDEALRPALKKAGFLTRDARTVERKKYGRHKARKSTQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_HAESO (30S ribosomal protein S9 OS=Haemophilus somnus GN=rpsI PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 58/125 (46.40%), Postives = 79/125 (63.20%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK + ARV ++ G+GK +IN R+   Y  G       ++ PL  +      D++V   GGG+SGQA AI  G+ RAL++  +  R  L+  G +TRD+R VERKK GLHKAR+ PQYSKR
Sbjct:    7 YGTGRRKSSSARVFIKPGSGKIVINQRELDVYF-GRETSRMIVRQPLELVELTDKLDLYVTVKGGGISGQAGAIRHGITRALIEYDETLRPALRAAGFVTRDARRVERKKIGLHKARRRPQYSKR 130          
The following BLAST results are available for this feature:
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_ERWT93.580e-2444.8030S ribosomal protein S9 OS=Erwinia tasmaniensis (... [more]
RS9_CELJU3.580e-2448.8030S ribosomal protein S9 OS=Cellvibrio japonicus (... [more]
RS9_MARMS4.675e-2444.6230S ribosomal protein S9 OS=Marinomonas sp. (strai... [more]
RS9_ERWCT4.675e-2443.0830S ribosomal protein S9 OS=Erwinia carotovora sub... [more]
RS9_BORHD4.675e-2449.1930S ribosomal protein S9 OS=Borrelia hermsii (stra... [more]
RS9_ALISL4.675e-2445.3830S ribosomal protein S9 OS=Aliivibrio salmonicida... [more]
RS9_PSEF56.106e-2448.8030S ribosomal protein S9 OS=Pseudomonas fluorescen... [more]
RS9_NITSB6.106e-2446.0330S ribosomal protein S9 OS=Nitratiruptor sp. (str... [more]
RS9_MAGSM6.106e-2446.1530S ribosomal protein S9 OS=Magnetococcus sp. (str... [more]
RS9_HAESO6.106e-2446.4030S ribosomal protein S9 OS=Haemophilus somnus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00015 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622924 ID=BQ622924; Name=BQ622924; organism=Citrus sinensis; type=EST; length=670bp
ACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAACTG
ACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGGCTCAA
ACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGTCCT
CCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGGAAT
ATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTGGTA
ACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGGTGG
CGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTGCAT
TGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGCCTT
CTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCATAA
AGCCCGCAAAGCCCCACAGTATTCCAAACGTTGAGGCCAGAATTACAGTG
TGATGGACTGTTACCCGTAGATCTATTTTCTGCTTGTATCTCTGAATTAT
TATTATTATTATTATTTTTGGTTTAACATTTTATGTTTGGAGTTTTGTAC
TTCAGTTCCGGGTATCATGGAATCATAAACCATTTTTGATAAAAAAAACC
TAACAAAACAACTACAAAAA
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