BQ622924

Overview
NameBQ622924
Unique NameBQ622924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_HAES2 (30S ribosomal protein S9 OS=Haemophilus somnus (strain 2336) GN=rpsI PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 58/125 (46.40%), Postives = 79/125 (63.20%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK + ARV ++ G+GK +IN R+   Y  G       ++ PL  +      D++V   GGG+SGQA AI  G+ RAL++  +  R  L+  G +TRD+R VERKK GLHKAR+ PQYSKR
Sbjct:    7 YGTGRRKSSSARVFIKPGSGKIVINQRELDVYF-GRETSRMIVRQPLELVELTDKLDLYVTVKGGGISGQAGAIRHGITRALIEYDETLRPALRAAGFVTRDARRVERKKIGLHKARRRPQYSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_HAES1 (30S ribosomal protein S9 OS=Haemophilus somnus (strain 129Pt) GN=rpsI PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 58/125 (46.40%), Postives = 79/125 (63.20%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK + ARV ++ G+GK +IN R+   Y  G       ++ PL  +      D++V   GGG+SGQA AI  G+ RAL++  +  R  L+  G +TRD+R VERKK GLHKAR+ PQYSKR
Sbjct:    7 YGTGRRKSSSARVFIKPGSGKIVINQRELDVYF-GRETSRMIVRQPLELVELTDKLDLYVTVKGGGISGQAGAIRHGITRALIEYDETLRPALRAAGFVTRDARRVERKKIGLHKARRRPQYSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_BORT9 (30S ribosomal protein S9 OS=Borrelia turicatae (strain 91E135) GN=rpsI PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 62/128 (48.44%), Postives = 82/128 (64.06%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKV----PLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK ++ARV ++EG G   IN RD   Y+Q     L+ +K     PLV       YD+++  +GGG+SGQA AI  G+ARAL  + ++++  LK  G LTRDSR VERKK G  KARK+ Q+SKR
Sbjct:   14 GTGRRKSSVARVYIREGKGDIKINNRDFDSYIQ-----LENLKTIALSPLVLTNTLGKYDLYINIYGGGISGQAGAIRHGIARALFDLDEEYKMVLKSNGFLTRDSRKVERKKFGKKKARKSFQFSKR 136          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_ACTSZ (30S ribosomal protein S9 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rpsI PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 59/130 (45.38%), Postives = 79/130 (60.77%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            AA   +GTGRRK + ARV ++ G GK  IN R  + Y  G       ++ PL  +      D+++   GGG+SGQA AI  G+ RAL++  +  R  L+  G +TRD+R VERKK GLHKAR+ PQYSKR
Sbjct:    3 AANQNYGTGRRKSSSARVFIKPGNGKITINQRSLEVYF-GRETSRMIVRQPLELVELTDKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRPALRAAGFVTRDARRVERKKVGLHKARRRPQYSKR 131          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RR9_STIHE (30S ribosomal protein S9, chloroplastic OS=Stigeoclonium helveticum GN=rps9 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 66/132 (50.00%), Postives = 80/132 (60.61%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETS--------YDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            G GRRK A+A+V L  G+G+FIIN   A  YLQ +P  +  I  P   L  + S         D  VK  GGG  GQA AI LGVARAL + + ++R  LK  G LT+DSR+ ER+K GL KARKAPQY KR
Sbjct:   11 GIGRRKEAVAQVQLLAGSGQFIINGLPANLYLQEDPRSILAIDAPFKQLHVDHSADKDSLQTLDTIVKVQGGGKIGQANAIKLGVARALCEFNGEYRKSLKDSGFLTQDSRIKERRKYGLKKARKAPQYHKR 142          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_SALTO (30S ribosomal protein S9 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=rpsI PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.975e-24
Identity = 64/122 (52.46%), Postives = 73/122 (59.84%), Query Frame = 2
Query:  116 GRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GRRK AI RV +  GTGK   N RD + Y     +  Q IK PLVT      +DV     GGG +GQA A+ L +ARAL+    D R  LKK G LTRD+R  E KK GL KARKAPQYSKR
Sbjct:   34 GRRKEAIVRVRIVPGTGKITCNGRDLEAYFPSK-VHQQLIKDPLVTTEKAEEFDVIANLRGGGTTGQAGALRLAIARALIASEPDDRPALKKAGFLTRDARAKESKKYGLKKARKAPQYSKR 154          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_PSEPF (30S ribosomal protein S9 OS=Pseudomonas fluorescens (strain Pf0-1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.975e-24
Identity = 61/125 (48.80%), Postives = 76/125 (60.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A ARV L+ GTG   IN R    +  G       ++ PL        +D++V   GGG+SGQA AI  G+ RAL+   +  RS L+K G +TRD+R VERKK GL KARK PQYSKR
Sbjct:    7 YGTGRRKTATARVFLRPGTGNISINNRSLDTFF-GRETARMVVRQPLELTETVEKFDIYVTVIGGGVSGQAGAIRHGITRALMDYDETLRSALRKAGFVTRDAREVERKKVGLRKARKRPQYSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_CLAMS (30S ribosomal protein S9 OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=rpsI PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.975e-24
Identity = 64/123 (52.03%), Postives = 81/123 (65.85%), Query Frame = 2
Query:  116 GRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDH-RSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GRRK A ARV L  G+G   +N R+  +Y   N L  Q +  P   L    SYDV  +  GGG SGQA A+ LG+ARAL ++ +++ R+ LKK G L+RD+RV ERKKAGL KARKAPQ+SKR
Sbjct:   40 GRRKQATARVRLVPGSGSITVNGREFADYFP-NKLHQQLVNDPFKVLDLLGSYDVVARISGGGPSGQAGALRLGIARALNEIDEENNRAVLKKNGFLSRDARVKERKKAGLKKARKAPQFSKR 161          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_SERP5 (30S ribosomal protein S9 OS=Serratia proteamaculans (strain 568) GN=rpsI PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.042e-23
Identity = 56/130 (43.08%), Postives = 80/130 (61.54%), Query Frame = 2
Query:   92 AAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            A    +GTGRRK + ARV ++ G+G  +IN R  ++Y  G       ++ PL        +D+++   GGG+SGQA AI  G+ RAL++  +  R  L+K G +TRD+R VERKK GL KAR+ PQ+SKR
Sbjct:    2 AENQYYGTGRRKSSAARVFIKPGSGNIVINQRSLEQYF-GRETARMVVRQPLELTDMVGKFDLYITVKGGGISGQAGAIRHGITRALMEYDETLRGELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_PSEU2 (30S ribosomal protein S9 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=rpsI PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.042e-23
Identity = 60/125 (48.00%), Postives = 76/125 (60.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A ARV L+ GTG   IN R    +  G       ++ PL        +D++V   GGG+SGQA AI  G+ RAL++  +  R  L+K G +TRD+R VERKK GL KARK PQYSKR
Sbjct:    7 YGTGRRKTATARVFLRPGTGNISINNRSLDNFF-GRETARMVVRQPLELTETVEKFDIYVTVIGGGVSGQAGAIRHGITRALMQYDETLRGALRKAGFVTRDAREVERKKVGLRKARKRPQYSKR 130          
The following BLAST results are available for this feature:
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_HAES26.106e-2446.4030S ribosomal protein S9 OS=Haemophilus somnus (st... [more]
RS9_HAES16.106e-2446.4030S ribosomal protein S9 OS=Haemophilus somnus (st... [more]
RS9_BORT96.106e-2448.4430S ribosomal protein S9 OS=Borrelia turicatae (st... [more]
RS9_ACTSZ6.106e-2445.3830S ribosomal protein S9 OS=Actinobacillus succino... [more]
RR9_STIHE6.106e-2450.0030S ribosomal protein S9, chloroplastic OS=Stigeoc... [more]
RS9_SALTO7.975e-2452.4630S ribosomal protein S9 OS=Salinispora tropica (s... [more]
RS9_PSEPF7.975e-2448.8030S ribosomal protein S9 OS=Pseudomonas fluorescen... [more]
RS9_CLAMS7.975e-2452.0330S ribosomal protein S9 OS=Clavibacter michiganen... [more]
RS9_SERP51.042e-2343.0830S ribosomal protein S9 OS=Serratia proteamaculan... [more]
RS9_PSEU21.042e-2348.0030S ribosomal protein S9 OS=Pseudomonas syringae p... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00015 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622924 ID=BQ622924; Name=BQ622924; organism=Citrus sinensis; type=EST; length=670bp
ACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAACTG
ACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGGCTCAA
ACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGTCCT
CCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGGAAT
ATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTGGTA
ACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGGTGG
CGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTGCAT
TGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGCCTT
CTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCATAA
AGCCCGCAAAGCCCCACAGTATTCCAAACGTTGAGGCCAGAATTACAGTG
TGATGGACTGTTACCCGTAGATCTATTTTCTGCTTGTATCTCTGAATTAT
TATTATTATTATTATTTTTGGTTTAACATTTTATGTTTGGAGTTTTGTAC
TTCAGTTCCGGGTATCATGGAATCATAAACCATTTTTGATAAAAAAAACC
TAACAAAACAACTACAAAAA
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