BQ622924

Overview
NameBQ622924
Unique NameBQ622924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_PSESM (30S ribosomal protein S9 OS=Pseudomonas syringae pv. tomato GN=rpsI PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.042e-23
Identity = 60/125 (48.00%), Postives = 76/125 (60.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A ARV L+ GTG   IN R    +  G       ++ PL        +D++V   GGG+SGQA AI  G+ RAL++  +  R  L+K G +TRD+R VERKK GL KARK PQYSKR
Sbjct:    7 YGTGRRKTATARVFLRPGTGNISINNRSLDNFF-GRETARMVVRQPLELTETVEKFDIYVTVIGGGVSGQAGAIRHGITRALMQYDETLRGALRKAGFVTRDAREVERKKVGLRKARKRPQYSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_PSE14 (30S ribosomal protein S9 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=rpsI PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.042e-23
Identity = 60/125 (48.00%), Postives = 76/125 (60.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A ARV L+ GTG   IN R    +  G       ++ PL        +D++V   GGG+SGQA AI  G+ RAL++  +  R  L+K G +TRD+R VERKK GL KARK PQYSKR
Sbjct:    7 YGTGRRKTATARVFLRPGTGNISINNRSLDNFF-GRETARMVVRQPLELTETVEKFDIYVTVIGGGVSGQAGAIRHGITRALMQYDETLRGALRKAGFVTRDAREVERKKVGLRKARKRPQYSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_METCA (30S ribosomal protein S9 OS=Methylococcus capsulatus GN=rpsI PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.042e-23
Identity = 66/130 (50.77%), Postives = 82/130 (63.08%), Query Frame = 2
Query:   95 AQT-IFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            AQT  +GTGRRK AIARV  + GTG+  IN +  +EY  G       +   L  +      DV VK  GGG SGQA AI  G+ARAL+++ +  R  L+K G +TRD+R VERKK GLHKAR+ PQYSKR
Sbjct:    2 AQTQYYGTGRRKSAIARVYTRTGTGQIRINDKSLEEYF-GRKTDRMIVMQALEAVEMTDKLDVNVKVIGGGPSGQAGAIRHGLARALIELDEAMRPVLRKAGYVTRDAREVERKKVGLHKARRRPQYSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_JANMA (30S ribosomal protein S9 OS=Janthinobacterium sp. (strain Marseille) GN=rpsI PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.042e-23
Identity = 57/125 (45.60%), Postives = 79/125 (63.20%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK A+ARV ++ G+G+ ++N + A EY       L  I+ PL       ++D+ V  +GGG SGQA A+  G+ RAL+      +S L K G +TRD+R VERKK GL KAR+A Q+SKR
Sbjct:    7 YGTGRRKSAVARVFIKSGSGQIVVNGKPANEYFS-RETGLMVIRQPLELTNNVETFDIMVNVNGGGESGQAGAVRHGITRALIDYDATLKSELSKAGFVTRDAREVERKKVGLRKARRAKQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_GRAFK (30S ribosomal protein S9 OS=Gramella forsetii (strain KT0803) GN=rpsI PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.042e-23
Identity = 57/128 (44.53%), Postives = 83/128 (64.84%), Query Frame = 2
Query:   98 QTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            + I   GRRK A+ARV + EG G   +N +D K+Y     L L  +  P++    E ++DV +  +GGG++GQA+AI L ++RA++ + +++   LK EGLLTRD R+VERKK G  KARK  Q+SKR
Sbjct:    2 EVIHKIGRRKTAVARVYVSEGKGNITVNKKDLKDYFTTGTL-LYKVNQPMMLTENEGNFDVKINVYGGGITGQAEAIRLALSRAMVALDEENHGALKPEGLLTRDPRMVERKKYGQKKARKKFQFSKR 128          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_COLP3 (30S ribosomal protein S9 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rpsI PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.042e-23
Identity = 59/125 (47.20%), Postives = 76/125 (60.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK + ARV ++ G G   IN RD  EY  G       ++ PL  +     +D  +   GGG+SGQA AI  G+ RAL+   +  R  L+K G +TRD+R VERKK GLHKARK PQ+SKR
Sbjct:    7 YGTGRRKSSTARVFMKAGNGAITINKRDISEYF-GRETARMVVRQPLELVEMLEKFDFNISVVGGGISGQAGAIRHGITRALMVFDETLRGELRKAGFVTRDARKVERKKVGLHKARKKPQFSKR 130          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_BORBZ (30S ribosomal protein S9 OS=Borrelia burgdorferi (strain ZS7) GN=rpsI PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.042e-23
Identity = 58/124 (46.77%), Postives = 81/124 (65.32%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK ++ARV ++EG+G   +N RD   Y+Q   L    +  PLV       YD+++  +GGG+SGQ+ AI  G++RAL K+ + ++  L+  G LTRDSR VERKK G  KARK+ Q+SKR
Sbjct:   14 GTGRRKSSVARVYIREGSGNIKVNNRDFDSYIQLENLRTMALS-PLVLTNTLGKYDLYINVYGGGISGQSGAIRHGISRALFKLDESNKMILRSNGFLTRDSRKVERKKFGQKKARKSFQFSKR 136          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_BORBU (30S ribosomal protein S9 OS=Borrelia burgdorferi GN=rpsI PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.042e-23
Identity = 58/124 (46.77%), Postives = 81/124 (65.32%), Query Frame = 2
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK ++ARV ++EG+G   +N RD   Y+Q   L    +  PLV       YD+++  +GGG+SGQ+ AI  G++RAL K+ + ++  L+  G LTRDSR VERKK G  KARK+ Q+SKR
Sbjct:   14 GTGRRKSSVARVYIREGSGNIKVNNRDFDSYIQLENLRTMALS-PLVLTNTLGKYDLYINVYGGGISGQSGAIRHGISRALFKLDESNKMILRSNGFLTRDSRKVERKKFGQKKARKSFQFSKR 136          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_AZOC5 (30S ribosomal protein S9 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rpsI PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.042e-23
Identity = 62/125 (49.60%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            + TG+RK A+ARV ++ GTGK I+N R  + Y    P+    I  P      E +YDV     GGGLSGQA A+  G++RAL     + R PLKK G LTRDSRVVERKK G  KAR++ Q+SKR
Sbjct:   31 YATGKRKDAVARVWVRPGTGKIIVNDRPVEVYF-ARPVLRLIINQPFAAAAREGAYDVVCTVSGGGLSGQAGALRHGISRALTFYEPELRGPLKKGGFLTRDSRVVERKKYGRAKARRSFQFSKR 154          
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_XYLFM (30S ribosomal protein S9 OS=Xylella fastidiosa (strain M12) GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.360e-23
Identity = 57/125 (45.60%), Postives = 81/125 (64.80%), Query Frame = 2
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK + ARV L++G+G   +N R   E+  G       ++ PL      +++D+ + A GGG +GQA AI LG+ARAL++     +  L+K G +TRD+R VERKK GLHKAR+A Q+SKR
Sbjct:    7 YGTGRRKSSTARVFLRKGSGNISVNGRPLDEFF-GRETARMIVRQPLELTKNVSNFDILITATGGGTTGQAGAIRLGIARALVEYDTSLKPELRKAGFMTRDAREVERKKVGLHKARRATQFSKR 130          
The following BLAST results are available for this feature:
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_PSESM1.042e-2348.0030S ribosomal protein S9 OS=Pseudomonas syringae p... [more]
RS9_PSE141.042e-2348.0030S ribosomal protein S9 OS=Pseudomonas syringae p... [more]
RS9_METCA1.042e-2350.7730S ribosomal protein S9 OS=Methylococcus capsulat... [more]
RS9_JANMA1.042e-2345.6030S ribosomal protein S9 OS=Janthinobacterium sp. ... [more]
RS9_GRAFK1.042e-2344.5330S ribosomal protein S9 OS=Gramella forsetii (str... [more]
RS9_COLP31.042e-2347.2030S ribosomal protein S9 OS=Colwellia psychrerythr... [more]
RS9_BORBZ1.042e-2346.7730S ribosomal protein S9 OS=Borrelia burgdorferi (... [more]
RS9_BORBU1.042e-2346.7730S ribosomal protein S9 OS=Borrelia burgdorferi G... [more]
RS9_AZOC51.042e-2349.6030S ribosomal protein S9 OS=Azorhizobium caulinoda... [more]
RS9_XYLFM1.360e-2345.6030S ribosomal protein S9 OS=Xylella fastidiosa (st... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00015 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622924 ID=BQ622924; Name=BQ622924; organism=Citrus sinensis; type=EST; length=670bp
ACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAACTG
ACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGGCTCAA
ACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGTCCT
CCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGGAAT
ATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTGGTA
ACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGGTGG
CGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTGCAT
TGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGCCTT
CTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCATAA
AGCCCGCAAAGCCCCACAGTATTCCAAACGTTGAGGCCAGAATTACAGTG
TGATGGACTGTTACCCGTAGATCTATTTTCTGCTTGTATCTCTGAATTAT
TATTATTATTATTATTTTTGGTTTAACATTTTATGTTTGGAGTTTTGTAC
TTCAGTTCCGGGTATCATGGAATCATAAACCATTTTTGATAAAAAAAACC
TAACAAAACAACTACAAAAA
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